CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GA14827-RA
(
Drosophila pseudoobscura
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0074854
T43135_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0286775
RRM
105
145
HPLVSKSTKPRQKHARFCLVDFKSQEDRDQAFEDIKKSIET
FBpp0286775
RRM
202
267
VVITNLPKTSSVAQVRQLFENAVDIQIKPGKGKFREFSAATVTLPTTFDARKAIKQDLSLAGTKLQ
Links
Other
RRM
family RBPs
Other
Drosophila pseudoobscura
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG18178
Drosophila melanogaster
FBgn0036035
N
0.773
GD12899
Drosophila simulans
FBgn0184624
N
0.782
GE21215
Drosophila yakuba
FBgn0068368
N
0.791
GF25131
Drosophila ananassae
FBgn0102123
N
0.780
GG14013
Drosophila erecta
FBgn0106275
N
0.791
GI16595
Drosophila mojavensis
FBgn0139343
N
0.704
GJ12847
Drosophila virilis
FBgn0200082
N
0.796
GK13495
Drosophila willistoni
FBgn0215503
N
0.739
GL17875
Drosophila persimilis
FBgn0155478
N
1.000
GM24847
Drosophila sechellia
FBgn0179709
N
0.773