CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma18g33150.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma18g33150.1
T52914_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma18g33150.1
RRM
295
362
IYVKGLPPTATPAVLENEFKKFGPIKSGGIQVRSQKGFSFGFVEFEVASAVQSALEASPILINGRQVV
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
15 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
30217.m000250
Ricinus communis
30217.m000250
N
0.794
AT3G25150
Arabidopsis thaliana
AT3G25150-TAIR-G
N
0.721
B9GQM2_POPTR
Populus trichocarpa
POPTR_0002s24800
N
0.779
cassava38071.valid.m1
Manihot esculenta
cassava38071.valid.m1
N
0.794
cassava6829.valid.m1
Manihot esculenta
cassava6829.valid.m1
N
0.809
cassava6830.valid.m1
Manihot esculenta
cassava6830.valid.m1
N
0.809
cassava6831.valid.m1
Manihot esculenta
cassava6831.valid.m1
N
0.809
cassava6832.valid.m1
Manihot esculenta
cassava6832.valid.m1
N
0.809
cassava6833.valid.m1
Manihot esculenta
cassava6833.valid.m1
N
0.809
Glyma08g46190.1
Glycine max
Glyma08g46190.1
N
0.941
GSVIVG00003923001
Vitis vinifera
GSVIVG00003923001
N
0.768
LjT09O11.20.nd
Lotus japonicus
LjT09O11.20.nd
N
0.868
Medtr7g062040
Medicago truncatula
Medtr7g062040
N
0.750
PK18139.1
Cannabis sativa
PK18139.1
N
0.779
scaffold_2600002.1
Arabidopsis lyrata
scaffold_2600002.1
N
0.721