B9GQM2_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0002s24800 T45475_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s24800.1 RRM 314 380
POPTR_0002s24800.2 RRM 314 380

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

15 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava6831.valid.m1 Manihot esculenta cassava6831.valid.m1 N 0.838
cassava6833.valid.m1 Manihot esculenta cassava6833.valid.m1 N 0.838
cassava6830.valid.m1 Manihot esculenta cassava6830.valid.m1 N 0.838
cassava6832.valid.m1 Manihot esculenta cassava6832.valid.m1 N 0.838
cassava6829.valid.m1 Manihot esculenta cassava6829.valid.m1 N 0.838
30217.m000250 Ricinus communis 30217.m000250 N 0.838
cassava38071.valid.m1 Manihot esculenta cassava38071.valid.m1 N 0.821
PK18139.1 Cannabis sativa PK18139.1 N 0.779
Glyma18g33150.1 Glycine max Glyma18g33150.1 N 0.779
AT3G25150 Arabidopsis thaliana AT3G25150-TAIR-G N 0.750
Glyma08g46190.1 Glycine max Glyma08g46190.1 N 0.750
LjT09O11.20.nd Lotus japonicus LjT09O11.20.nd N 0.750
scaffold_2600002.1 Arabidopsis lyrata scaffold_2600002.1 N 0.721
GSVIVG00003923001 Vitis vinifera GSVIVG00003923001 N 0.706