CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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EFA75115.1
(
Polysphondylium pallidum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
EFA75115.1
T54334_0.6
NCBI (2013-Jan-11)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFA75115.1
RRM
17
84
LFVKNLPFKITSAEIYELFGAYGGIRQVRLGNASDTMGTAFVVYDDIFDARNACEHLSGYNFGGRYLV
Links
Other
RRM
family RBPs
Other
Polysphondylium pallidum
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAI23362
Xenopus laevis
AAI23362
N
0.000
Ame_R000880
Ailuropoda melanoleuca
Ame_R000880
N
0.000
B5G0X9_TAEGU
Taeniopygia guttata
ENSTGUG00000015471
N
0.000
ENSPPYG00000005088
Pongo pygmaeus
ENSPPYG00000005088
N
0.000
LOC100059055
Equus caballus
ENSECAG00000006080
N
0.000
LOC100415261
Callithrix jacchus
ENSCJAG00000007131
N
0.000
Q05AT9
Xenopus laevis
Q05AT9
N
0.000
SNRNP35
Ochotona princeps
ENSOPRG00000011119
N
0.000
SNRNP35
Oryzias latipes
ENSORLG00000005673
N
0.000
SNRNP35
Procavia capensis
ENSPCAG00000011478
N
0.000
SNRNP35
Otolemur garnettii
ENSOGAG00000011301
N
0.000
SNRNP35
Pan troglodytes
ENSPTRG00000023573
N
0.000
SNRNP35
Pteropus vampyrus
ENSPVAG00000015317
N
0.000
Snrnp35
Rattus norvegicus
ENSRNOG00000001060
N
0.000
SNRNP35
Sorex araneus
ENSSARG00000012656
N
0.000
SNRNP35
Tupaia belangeri
ENSTBEG00000002309
N
0.000
SNRNP35
Taeniopygia guttata
ENSTGUG00000005364
N
0.000
SNRNP35
Tetraodon nigroviridis
ENSTNIG00000009984
N
0.000
SNRNP35
Takifugu rubripes
ENSTRUG00000017100
N
0.000
SNRNP35
Oryctolagus cuniculus
ENSOCUG00000021248
N
0.000
SNRNP35
Ornithorhynchus anatinus
ENSOANG00000002697
N
0.000
SNRNP35
Canis familiaris
ENSCAFG00000007484
N
0.000
SNRNP35
Choloepus hoffmanni
ENSCHOG00000006263
N
0.000
SNRNP35
Cavia porcellus
ENSCPOG00000002548
N
0.000
snrnp35
Danio rerio
ENSDARG00000044426
N
0.000
SNRNP35
Erinaceus europaeus
ENSEEUG00000011544
N
0.000
SNRNP35
Felis catus
ENSFCAG00000001159
N
0.000
SNRNP35
Homo sapiens
ENSG00000184209
N
0.000
SNRNP35
Gasterosteus aculeatus
ENSGACG00000020631
N
0.000
SNRNP35
Gallus gallus
ENSGALG00000003318
N
0.000
SNRNP35
Gorilla gorilla
ENSGGOG00000015936
N
0.000
SNRNP35
Loxodonta africana
ENSLAFG00000022302
N
0.000
SNRNP35
Meleagris gallopavo
ENSMGAG00000003241
N
0.000
SNRNP35
Macaca mulatta
ENSMMUG00000008411
N
0.000
SNRNP35
Monodelphis domestica
ENSMODG00000012481
N
0.000
Snrnp35
Mus musculus
ENSMUSG00000029402
N
0.000
SNRNP35
Anolis carolinensis
ENSACAG00000015421
N
0.000
U1SBP_BOVIN
Bos taurus
ENSBTAG00000008060
N
0.000