cassava31399.valid.m1 (Manihot esculenta)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		cassava31399.valid.m1 T00844_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava31399.valid.m1 CCCH ZF 189 214
cassava31399.valid.m1 RRM 350 410

Links

Other CCCH ZF,RRM family RBPs
Other Manihot esculenta RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002876131.1 Arabidopsis lyrata fgenesh2_kg.5__1664__AT3G52980.1 N 0.759
AT2G05160 Arabidopsis thaliana AT2G05160-TAIR-G N 0.805
PK01281.1 Cannabis sativa PK01281.1 N 0.839
PK20504.1 Cannabis sativa PK20504.1 N 0.828
Glyma08g43790.1 Glycine max Glyma08g43790.1 N 0.770
Glyma14g01930.1 Glycine max Glyma14g01930.1 N 0.770
Glyma18g09020.1 Glycine max Glyma18g09020.1 N 0.736
MDP0000214614 Malus x domestica MDP0000214614 N 0.793
MDP0000906147 Malus x domestica MDP0000906147 N 0.828
cassava7063.valid.m1 Manihot esculenta cassava7063.valid.m1 N 0.966
cassava36931.valid.m1 Manihot esculenta cassava36931.valid.m1 N 0.816
cassava31400.valid.m1 Manihot esculenta cassava31400.valid.m1 N 1.000
Medtr5g102170 Medicago truncatula Medtr5g102170 N 0.724
Medtr3g077080 Medicago truncatula Medtr3g077080 N 0.736
mgf003557m Mimulus guttatus mgf003557m N 0.759
B9IAR9_POPTR Populus trichocarpa POPTR_0014s16340 N 0.828
B9GTF9_POPTR Populus trichocarpa POPTR_0002s22240 N 0.770
ppa003564m Prunus persica ppa003564m N 0.793
ppa019338m Prunus persica ppa019338m N 0.897
27613.m000645 Ricinus communis 27613.m000645 N 0.885
29223.m000023 Ricinus communis 29223.m000023 N 0.747
GSVIVG00037782001 Vitis vinifera GSVIVG00037782001 N 0.839