ZFP36 (Canis familiaris)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSCAFG00000005530 T02295_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.889
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.889
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.889
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.889
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.889
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.889
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.889
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.889
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000008265 CCCH ZF 102 128
ENSCAFP00000008265 CCCH ZF 140 163

Links

Other CCCH ZF family RBPs
Other Canis familiaris RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
DGIL_AUG5s10476g1t2 Acyrtosiphon pisum DGIL_AUG5s10476g1t2 N 0.000
DGIL_AUG5s4425g1t1 Acyrtosiphon pisum DGIL_AUG5s4425g1t1 N 0.000
DGIL_AUG5s7013g3t1 Acyrtosiphon pisum DGIL_AUG5s7013g3t1 N 0.000
DGIL_AUG5s8628g1t2 Acyrtosiphon pisum DGIL_AUG5s8628g1t2 N 0.000
fgenesh1_pg.C_scaffold_212000013 Daphnia pulex fgenesh1_pg.C_scaffold_212000013 N 0.000
SNAP_00016463 Daphnia pulex SNAP_00016463 N 0.000
fgenesh2_pg.15_#_380 Fragilariopsis cylindrus fgenesh2_pg.15_#_380 N 0.000
Minc12443 Meloidogyne incognita Minc12443 N 0.000
Minc10876 Meloidogyne incognita Minc10876 N 0.000
Minc09197 Meloidogyne incognita Minc09197 N 0.000
Minc06343 Meloidogyne incognita Minc06343 N 0.000
Minc01889 Meloidogyne incognita Minc01889 N 0.000
Minc00467 Meloidogyne incognita Minc00467 N 0.000
Minc00058 Meloidogyne incognita Minc00058 N 0.000
Minc13978 Meloidogyne incognita Minc13978 N 0.000