fgenesh1_pg.C_scaffold_212000013 (Daphnia pulex)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_212000013 T13849_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_212000013 CCHC ZF 120 137

Links

Other CCHC ZF family RBPs
Other Daphnia pulex RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
NCBI_GNO_14600006 Daphnia pulex NCBI_GNO_14600006 N 0.778
PGTG_03348 Puccinia graminis PGTG_03348 N 0.722
PGTG_05408 Puccinia graminis PGTG_05408 N 0.722
PGTG_03172 Puccinia graminis PGTG_03172 N 0.722
LjSGA_136986.1.1 Lotus japonicus LjSGA_136986.1.1 N 0.722
LjSGA_133570.1 Lotus japonicus LjSGA_133570.1 N 0.722
PGTG_09834 Puccinia graminis PGTG_09834 N 0.722
PGTG_12646 Puccinia graminis PGTG_12646 N 0.722
PGTG_20442 Puccinia graminis PGTG_20442 N 0.722
DGIL_AUG5s10476g1t2 Acyrtosiphon pisum DGIL_AUG5s10476g1t2 N 0.722
PGTG_18613 Puccinia graminis PGTG_18613 N 0.722
PGTG_16335 Puccinia graminis PGTG_16335 N 0.722
PGTG_15116 Puccinia graminis PGTG_15116 N 0.722
LjSGA_132918.1 Lotus japonicus LjSGA_132918.1 N 0.722
LjSGA_130508.1 Lotus japonicus LjSGA_130508.1 N 0.722
LjSGA_083550.1 Lotus japonicus LjSGA_083550.1 N 0.722
LjSGA_088344.1 Lotus japonicus LjSGA_088344.1 N 0.722
LjSGA_077546.1 Lotus japonicus LjSGA_077546.1 N 0.722
LjSGA_073314.1 Lotus japonicus LjSGA_073314.1 N 0.722
SNAP_00016463 Daphnia pulex SNAP_00016463 N 0.722
LjSGA_091651.1 Lotus japonicus LjSGA_091651.1 N 0.722
LjSGA_113964.1 Lotus japonicus LjSGA_113964.1 N 0.722
LjSGA_120238.1 Lotus japonicus LjSGA_120238.1 N 0.722
LjSGA_118711.1 Lotus japonicus LjSGA_118711.1 N 0.722
LjSGA_115869.1 Lotus japonicus LjSGA_115869.1 N 0.722
LjSGA_114624.1 Lotus japonicus LjSGA_114624.1 N 0.722
LjSGA_129847.1 Lotus japonicus LjSGA_129847.1 N 0.722