zc3h6 (Xenopus tropicalis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 ENSXETG00000013762 T03640_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000030149 CCCH ZF 73 98
ENSXETP00000030149 CCCH ZF 102 127
ENSXETP00000030149 CCCH ZF 126 151
ENSXETP00000030151 CCCH ZF 200 225
ENSXETP00000030151 CCCH ZF 229 254
ENSXETP00000030151 CCCH ZF 253 278
ENSXETP00000030154 CCCH ZF 204 229
ENSXETP00000030154 CCCH ZF 233 258
ENSXETP00000030154 CCCH ZF 257 282

Links

Other CCCH ZF family RBPs
Other Xenopus tropicalis RBPs

62 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R012777 Ailuropoda melanoleuca Ame_R012777 N 0.756
Ame_R012775 Ailuropoda melanoleuca Ame_R012775 N 0.885
ZC3H6 Anolis carolinensis ENSACAG00000005815 N 0.833
Q17QY2_BOVIN Bos taurus ENSBTAG00000015965 N 0.808
ZC3H6 Bos taurus ENSBTAG00000020646 N 0.897
ZC3H6 Callithrix jacchus ENSCJAG00000016479 N 0.897
A6MKC0_CALJA Callithrix jacchus ENSCJAG00000016492 N 0.808
ZC3H8 Canis familiaris ENSCAFG00000007155 N 0.808
ZC3H6 Canis familiaris ENSCAFG00000007160 N 0.897
ENSCPOG00000023849 Cavia porcellus ENSCPOG00000023849 N 0.718
ENSCPOG00000008258 Cavia porcellus ENSCPOG00000008258 N 0.756
ZC3H8 Choloepus hoffmanni ENSCHOG00000010391 N 0.808
CABZ01077452.1 Danio rerio ENSDARG00000075165 N 0.782
ZC3H8 Dasypus novemcinctus ENSDNOG00000018056 N 0.808
ZC3H6 Dasypus novemcinctus ENSDNOG00000000253 N 0.859
Zc3h6 Dipodomys ordii ENSDORG00000013967 N 0.885
ZC3H8 Echinops telfairi ENSETEG00000016560 N 0.731
ZC3H8 Erinaceus europaeus ENSEEUG00000006984 N 0.756
ZC3H6 Gallus gallus ENSGALG00000008269 N 0.897
ENSGACG00000005343 Gasterosteus aculeatus ENSGACG00000005343 N 0.756
ZC3H6 Gorilla gorilla ENSGGOG00000001665 N 0.897
ZC3H8 Gorilla gorilla ENSGGOG00000009004 N 0.808
ZC3H8 Homo sapiens ENSG00000144161 N 0.808
ZC3H6 Homo sapiens ENSG00000188177 N 0.897
ZC3H6 Loxodonta africana ENSLAFG00000001151 N 0.897
ZC3H8 Loxodonta africana ENSLAFG00000004675 N 0.808
ZC3H6 Macaca mulatta ENSMMUG00000016430 N 0.808
ZC3H6 Meleagris gallopavo ENSMGAG00000003025 N 0.897
ZC3H8 Microcebus murinus ENSMICG00000013555 N 0.731
ZC3H6 Monodelphis domestica ENSMODG00000006612 N 0.744
Zc3h8 Mus musculus ENSMUSG00000027387 N 0.782
Zc3h6 Mus musculus ENSMUSG00000042851 N 0.808
ZC3H6 Myotis lucifugus ENSMLUG00000004896 N 0.782
ZC3H6 Ochotona princeps ENSOPRG00000012717 N 0.885
ZC3H8 Ochotona princeps ENSOPRG00000011183 N 0.756
ZC3H6 Ornithorhynchus anatinus ENSOANG00000012054 N 0.923
ZC3H6 Oryctolagus cuniculus ENSOCUG00000011125 N 0.872
ZC3H8 Oryctolagus cuniculus ENSOCUG00000011253 N 0.795
ZC3H4 Oryzias latipes ENSORLG00000011179 N 0.744
ZC3H6 Otolemur garnettii ENSOGAG00000002556 N 0.808
ZC3H8 Pan troglodytes ENSPTRG00000012362 N 0.808
ZC3H6 Pan troglodytes ENSPTRG00000012363 N 0.897
ENSPPYG00000012165 Pongo pygmaeus ENSPPYG00000012165 N 0.808
ZC3H6 Procavia capensis ENSPCAG00000015468 N 0.833
ZC3H8 Procavia capensis ENSPCAG00000015426 N 0.756
ZC3H6 Pteropus vampyrus ENSPVAG00000013728 N 0.885
Zc3h6 Rattus norvegicus ENSRNOG00000026277 N 0.756
Zc3h8 Rattus norvegicus ENSRNOG00000017647 N 0.795
ZC3H6 Sorex araneus ENSSARG00000001035 N 0.833
ZC3H8 Sorex araneus ENSSARG00000012883 N 0.744
ZC3H6 Spermophilus tridecemlineatus ENSSTOG00000008120 N 0.808
ZC3H8 Sus scrofa ENSSSCG00000008099 N 0.808
ZC3H6 Sus scrofa ENSSSCG00000008096 N 0.897
ZC3H8 Taeniopygia guttata ENSTGUG00000007468 N 0.833
ENSTRUG00000012901 Takifugu rubripes ENSTRUG00000012901 N 0.769
ZC3H6 Tarsius syrichta ENSTSYG00000006672 N 0.897
ENSTNIG00000016608 Tetraodon nigroviridis ENSTNIG00000016608 N 0.756
ZC3H6 Tupaia belangeri ENSTBEG00000016232 N 0.808
ZC3H6 Tursiops truncatus ENSTTRG00000013154 N 0.897
ZC3H8 Vicugna pacos ENSVPAG00000005911 N 0.808
ZC3H6 Vicugna pacos ENSVPAG00000005912 N 0.897