B9MU37_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0001s02330 T04009_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s02330.1 CCCH ZF 91 116
POPTR_0001s02330.1 CCCH ZF 163 189
POPTR_0001s02330.1 CCCH ZF 257 283

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002890939.1 Arabidopsis lyrata scaffold_103602.1 N 0.900
AT1G32360 Arabidopsis thaliana AT1G32360-TAIR-G N 0.900
BRADI3G16360 Brachypodium distachyon BRADI3G16360 N 0.925
BRADI3G16377 Brachypodium distachyon BRADI3G16377 N 0.925
PK04103.1 Cannabis sativa PK04103.1 N 0.938
Cucsa.312990 Cucumis sativus Cucsa.312990 N 0.963
Glyma01g10610.1 Glycine max Glyma01g10610.1 N 0.950
chr4.LjT10E08.110.nc Lotus japonicus chr4.LjT10E08.110.nc N 0.938
MDP0000706016 Malus x domestica MDP0000706016 N 0.963
MDP0000209929 Malus x domestica MDP0000209929 N 0.950
cassava5467.m1 Manihot esculenta cassava5467.m1 N 0.963
cassava25690.m1 Manihot esculenta cassava25690.m1 N 0.975
Medtr8g078060 Medicago truncatula Medtr8g078060 N 0.938
mgf004101m Mimulus guttatus mgf004101m N 0.912
mgf012162m Mimulus guttatus mgf012162m N 0.912
mgf003951m Mimulus guttatus mgf003951m N 0.912
BGIOSIBCE026569 Oryza indica BGIOSIBCE026569 N 0.912
LOC_Os08g06330 Oryza sativa LOC_Os08g06330 N 0.912
estExt_fgenesh1_pg.C_430142 Physcomitrella patens estExt_fgenesh1_pg.C_430142 N 0.700
B9GZ92_POPTR Populus trichocarpa POPTR_0003s09240 N 0.988
ppa008182m Prunus persica ppa008182m N 0.963
30054.m000804 Ricinus communis 30054.m000804 N 0.975
gw1.11.272.1 Selaginella moellendorfii gw1.11.272.1 N 0.725
GSVIVG00013136001 Vitis vinifera GSVIVG00013136001 N 0.938