mgf012162m (Mimulus guttatus)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 mgf012162m T05628_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf012162m CCCH ZF 86 111
mgf012162m CCCH ZF 157 183
mgf012162m CCCH ZF 238 264

Links

Other CCCH ZF family RBPs
Other Mimulus guttatus RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002890939.1 Arabidopsis lyrata scaffold_103602.1 N 0.925
AT1G32360 Arabidopsis thaliana AT1G32360-TAIR-G N 0.925
BRADI3G16360 Brachypodium distachyon BRADI3G16360 N 0.900
BRADI3G16377 Brachypodium distachyon BRADI3G16377 N 0.900
PK04103.1 Cannabis sativa PK04103.1 N 0.912
Cucsa.312990 Cucumis sativus Cucsa.312990 N 0.938
Glyma01g10610.1 Glycine max Glyma01g10610.1 N 0.938
chr4.LjT10E08.110.nc Lotus japonicus chr4.LjT10E08.110.nc N 0.925
MDP0000209929 Malus x domestica MDP0000209929 N 0.887
MDP0000706016 Malus x domestica MDP0000706016 N 0.900
cassava5467.m1 Manihot esculenta cassava5467.m1 N 0.912
cassava25690.m1 Manihot esculenta cassava25690.m1 N 0.925
Medtr8g078060 Medicago truncatula Medtr8g078060 N 0.925
mgf004101m Mimulus guttatus mgf004101m N 0.950
mgf003951m Mimulus guttatus mgf003951m N 0.950
BGIOSIBCE026569 Oryza indica BGIOSIBCE026569 N 0.887
LOC_Os08g06330 Oryza sativa LOC_Os08g06330 N 0.887
estExt_fgenesh1_pg.C_430142 Physcomitrella patens estExt_fgenesh1_pg.C_430142 N 0.713
B9GZ92_POPTR Populus trichocarpa POPTR_0003s09240 N 0.912
B9MU37_POPTR Populus trichocarpa POPTR_0001s02330 N 0.912
ppa008182m Prunus persica ppa008182m N 0.900
30054.m000804 Ricinus communis 30054.m000804 N 0.925
gw1.11.272.1 Selaginella moellendorfii gw1.11.272.1 N 0.713
GSVIVG00013136001 Vitis vinifera GSVIVG00013136001 N 0.887