CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pc20g04370
(
Penicillium chrysogenum
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Pc20g04370
T06454_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pc20g04370.t1
CCCH ZF
1
23
MVVCSFFQQGRCKFGDRCKFEHP
Links
Other
CCCH ZF
family RBPs
Other
Penicillium chrysogenum
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ACLA_092660
Aspergillus clavatus
CADACLAG00008386
N
0.739
AFLA_043160
Aspergillus flavus
CADAFLAG00005643
N
0.957
AFUA_2G02160
Aspergillus fumigatus
CADAFUAG00003346
N
0.913
ANIA_04595
Aspergillus nidulans
CADANIAG00005841
N
0.870
An07g06750
Aspergillus niger
CADANGAG00005948
N
0.783
CIMG_05516
Coccidioides immitis
CIMG_05516
N
0.739
MCYG_08333
Microsporum canis
MCYG_08333
N
0.708
NFIA_034530
Neosartorya fischeri
CADNFIAG00002955
N
0.870
PABG_07018
Paracoccidioides brasiliensis
PABG_07018
N
0.739