CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
NFIA_034530
(
Neosartorya fischeri
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CADNFIAG00002955
T02090_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADNFIAP00002866
CCCH ZF
1
23
MVVCTFFQQGRCRFGERCKFEHP
Links
Other
CCCH ZF
family RBPs
Other
Neosartorya fischeri
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AFUA_2G02160
Aspergillus fumigatus
CADAFUAG00003346
N
0.957
AFLA_043160
Aspergillus flavus
CADAFLAG00005643
N
0.913
Pc20g04370
Penicillium chrysogenum
Pc20g04370
N
0.870
ANIA_04595
Aspergillus nidulans
CADANIAG00005841
N
0.826
An07g06750
Aspergillus niger
CADANGAG00005948
N
0.826
ACLA_092660
Aspergillus clavatus
CADACLAG00008386
N
0.783
CIMG_05516
Coccidioides immitis
CIMG_05516
N
0.739
fgenesh1_pg.00009_#_218
Aspergillus carbonarius
fgenesh1_pg.00009_#_218
N
0.739