CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os02g03160
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os02g03160
T10863_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os02g03160.1
CCHC ZF
240
257
RTCFVCGQVGHLARKCPQ
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
157 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC784933
Bos taurus
ENSBTAG00000032779
N
0.000
LOC100397686
Callithrix jacchus
ENSCJAG00000018257
N
0.000
PDCD11
Felis catus
ENSFCAG00000002384
N
0.000
PDCD11
Ochotona princeps
ENSOPRG00000010593
N
0.000
PDCD11
Oryctolagus cuniculus
ENSOCUG00000006312
N
0.000
ENSPPYG00000002621
Pongo pygmaeus
ENSPPYG00000002621
N
0.000
PDCD11
Tursiops truncatus
ENSTTRG00000003356
N
0.000