LOC_Os05g17360 (Oryza sativa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 LOC_Os05g17360 T11414_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g17360.1 CCHC ZF 318 335

Links

Other CCHC ZF family RBPs
Other Oryza sativa RBPs

630 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R017809 Ailuropoda melanoleuca Ame_R017809 I 0.000
Ame_R005060 Ailuropoda melanoleuca Ame_R005060 I 0.000
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.000
ENSACAG00000013307 Anolis carolinensis ENSACAG00000013307 I 0.000
NONO Anolis carolinensis ENSACAG00000015026 I 0.000
Q2KJ42_BOVIN Bos taurus ENSBTAG00000012152 I 0.000
SFPQ Bos taurus ENSBTAG00000016328 I 0.000
TAF1 Callithrix jacchus ENSCJAG00000013390 I 0.000
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.000
LOC100386194 Callithrix jacchus ENSCJAG00000001431 I 0.000
LOC607081 Canis familiaris ENSCAFG00000003207 I 0.000
XM_532566.2 Canis familiaris ENSCAFG00000018271 I 0.000
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.000
ENSCAFG00000013766 Canis familiaris ENSCAFG00000013766 I 0.000
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.000
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.000
SFPQ Cavia porcellus ENSCPOG00000015018 I 0.000
ENSCPOG00000026604 Cavia porcellus ENSCPOG00000026604 I 0.000
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.000
sfpq Danio rerio ENSDARG00000011564 I 0.000
nono Danio rerio ENSDARG00000020482 I 0.000
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.000
Nono Dipodomys ordii ENSDORG00000009294 I 0.000
SFPQ Echinops telfairi ENSETEG00000001095 I 0.000
LOC100069588 Equus caballus ENSECAG00000000642 I 0.000
NONO Equus caballus ENSECAG00000008502 I 0.000
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.000
PSPC1_CHICK Gallus gallus ENSGALG00000017142 I 0.000
Q5ZIZ5_CHICK Gallus gallus ENSGALG00000005507 I 0.000
Q91017_CHICK Gallus gallus ENSGALG00000002514 I 0.000
NONO Gasterosteus aculeatus ENSGACG00000011824 I 0.000
ENSGACG00000002034 Gasterosteus aculeatus ENSGACG00000002034 I 0.000
NONO Gorilla gorilla ENSGGOG00000006194 I 0.000
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.000
NONO Homo sapiens ENSG00000147140 D 0.000
SFPQ Homo sapiens ENSG00000116560 D 0.000
NONO Loxodonta africana ENSLAFG00000013422 I 0.000
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.000
LOC697263 Macaca mulatta ENSMMUG00000020481 I 0.000
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.000
NONO Macropus eugenii ENSMEUG00000004294 I 0.000
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.000
NONO Microcebus murinus ENSMICG00000000232 I 0.000
SFPQ Microcebus murinus ENSMICG00000011755 I 0.000
NONO Monodelphis domestica ENSMODG00000004445 I 0.000
ENSMODG00000017937 Monodelphis domestica ENSMODG00000017937 I 0.000
Sfpq Mus musculus ENSMUSG00000028820 I 0.000
Nono Mus musculus ENSMUSG00000031311 I 0.000
NONO Myotis lucifugus ENSMLUG00000002489 I 0.000
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.000
ENSOANG00000008789 Ornithorhynchus anatinus ENSOANG00000008789 I 0.000
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.000
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.000
ENSORLG00000007459 Oryzias latipes ENSORLG00000007459 I 0.000
NONO Otolemur garnettii ENSOGAG00000004834 I 0.000
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.000
XR_025068.1 Pan troglodytes ENSPTRG00000022010 I 0.000
ENSPPYG00000001560 Pongo pygmaeus ENSPPYG00000001560 I 0.000
ENSPPYG00000020451 Pongo pygmaeus ENSPPYG00000020451 I 0.000
NONO Procavia capensis ENSPCAG00000002541 I 0.000
SFPQ Procavia capensis ENSPCAG00000006164 I 0.000
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.000
ENSRNOG00000022823 Rattus norvegicus ENSRNOG00000022823 N 0.000
Nono Rattus norvegicus ENSRNOG00000003689 I 0.000
Sfpq Rattus norvegicus ENSRNOG00000013154 I 0.000
NONO Sorex araneus ENSSARG00000007959 I 0.000
SFPQ Spermophilus tridecemlineatus ENSSTOG00000014004 I 0.000
NONO Spermophilus tridecemlineatus ENSSTOG00000015869 I 0.000
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.000
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.000
SFPQ Taeniopygia guttata ENSTGUG00000001722 I 0.000
ENSTRUG00000003783 Takifugu rubripes ENSTRUG00000003783 I 0.000
NONO Takifugu rubripes ENSTRUG00000005554 I 0.000
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.000
ENSTNIG00000011331 Tetraodon nigroviridis ENSTNIG00000011331 I 0.000
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.000
NONO Tursiops truncatus ENSTTRG00000009605 I 0.000
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.000
NONO Vicugna pacos ENSVPAG00000002272 I 0.000
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.000
BAE54372 Xenopus laevis BAE54372 I 0.000
AAH45128 Xenopus laevis AAH45128 I 0.000
nono Xenopus tropicalis ENSXETG00000020868 I 0.000
sfpq Xenopus tropicalis ENSXETG00000009682 I 0.000