CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os05g26230
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os05g26230
T11504_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os05g26230.1
CCHC ZF
310
327
GVCFNCGDPGHYADKCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
630 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB08288.1
Alternaria brassicicola
AB08288.1
N
0.000
ARB_06649
Arthroderma benhamiae
ARB_06649
N
0.000
ACLA_012010
Aspergillus clavatus
CADACLAG00000982
N
0.000
ANIA_04665
Aspergillus nidulans
CADANIAG00005768
N
0.000
An07g05140
Aspergillus niger
CADANGAG00005786
N
0.000
ATEG_05773
Aspergillus terreus
CADATEAG00002943
N
0.000
BDBG_01138
Blastomyces dermatitidis
BDBG_01138
N
0.000
BC1G_09608
Botrytis cinerea
BC1G_09608
N
0.000
CHGG_06716
Chaetomium globosum
CHGG_06716
N
0.000
CIMG_06780
Coccidioides immitis
CIMG_06780
N
0.000
CPSG_07351
Coccidioides posadasii
CPSG_07351
N
0.000
estExt_Genewise1.C_160643
Cochliobolus heterostrophus C5
estExt_Genewise1.C_160643
N
0.000
GLRG_07641
Colletotrichum graminicola
GLRG_07641
N
0.000
CC1G_01457
Coprinopsis cinerea
CC1G_01457
N
0.000
estExt_fgenesh1_kg.C_50230
Cryphonectria parasitica
estExt_fgenesh1_kg.C_50230
N
0.000
estExt_Genewise1Plus.C_110324
Daphnia pulex
estExt_Genewise1Plus.C_110324
N
0.000
FGSG_09419
Fusarium graminearum
FGSG_09419
N
0.000
FOXG_06071
Fusarium oxysporum
FOXG_06071
N
0.000
FVEG_03939
Fusarium verticillioides
FVEG_03939
N
0.000
gw1.4.2036.1
Heterobasidion annosum
gw1.4.2036.1
N
0.000
HCAG_00719
Histoplasma capsulatum
HCAG_00719
N
0.000
MGG_03086
Magnaporthe oryzae
MGG_03086
N
0.000
MCYG_01624
Microsporum canis
MCYG_01624
N
0.000
MGYG_04448
Microsporum gypseum
MGYG_04448
N
0.000
gw1.1.2440.1
Mucor circinelloides
gw1.1.2440.1
N
0.000
e_gw1.1.4685.1
Myceliophthora thermophila
e_gw1.1.4685.1
N
0.000
fgenesh1_pm.C_scaffold_1000287
Mycosphaerella fijiensis
fgenesh1_pm.C_scaffold_1000287
N
0.000
estExt_fgenesh1_pg.C_chr_10724
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_10724
N
0.000
e_gw1.18.2245.1
Nectria haematococca
e_gw1.18.2245.1
N
0.000
NFIA_078760
Neosartorya fischeri
CADNFIAG00007376
N
0.000
NCU02467
Neurospora crassa
NCU02467
N
0.000
estExt_Genewise1.C_21128
Neurospora discreta
estExt_Genewise1.C_21128
N
0.000
estExt_Genewise1Plus.C_180344
Neurospora tetrasperma
estExt_Genewise1Plus.C_180344
N
0.000
PABG_03870
Paracoccidioides brasiliensis
PABG_03870
N
0.000
Pc22g16450
Penicillium chrysogenum
Pc22g16450
N
0.000
PMAA_079770
Penicillium marneffei
PMAA_079770
N
0.000
EAT89749.2
Phaeosphaeria nodorum
EAT89749.2
N
0.000
gw1.4.1321.1
Pleurotus ostreatus
gw1.4.1321.1
N
0.000
PredSwiss_CON1238.1
Pneumocystis carinii
PredSwiss_CON1238.1
N
0.000
Pa_1_22200
Podospora anserina
Pa_1_22200
N
0.000
PTRG_01927
Pyrenophora tritici repentis
PTRG_01927
N
0.000
SS1G_03313
Sclerotinia sclerotiorum
SS1G_03313
N
0.000
e_gw1.2.1042.1
Sporobolomyces roseus
e_gw1.2.1042.1
N
0.000
SNOG_03018
Stagonospora nodorum
SNOG_03018
N
0.000
e_gw1.1.5996.1
Thielavia terrestris
e_gw1.1.5996.1
N
0.000
gw1.5.1175.1
Trichoderma atroviride
gw1.5.1175.1
N
0.000
gw1.16.255.1
Trichoderma reesei
gw1.16.255.1
N
0.000
e_gw1.12.826.1
Trichoderma virens
e_gw1.12.826.1
N
0.000
TEQG_02324
Trichophyton equinum
TEQG_02324
N
0.000
TERG_07863
Trichophyton rubrum
TERG_07863
N
0.000
TESG_00774
Trichophyton tonsurans
TESG_00774
N
0.000
TRV_02420
Trichophyton verrucosum
TRV_02420
N
0.000
GSTUMT00000089001
Tuber melanosporum
GSTUMT00000089001
N
0.000
UREG_03685
Uncinocarpus reesii
UREG_03685
N
0.000
VDBG_02287
Verticillium albo atrum
VDBG_02287
N
0.000
VDAG_02758
Verticillium dahliae
VDAG_02758
N
0.000