CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC_Os09g13800
(
Oryza sativa
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
LOC_Os09g13800
T12121_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os09g13800.1
CCHC ZF
269
286
RTCFVCGQPGHLARKCPQ
Links
Other
CCHC ZF
family RBPs
Other
Oryza sativa
RBPs
158 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AB08315.1
Alternaria brassicicola
AB08315.1
N
0.000
ADR062W
Ashbya gossypii
ADR062W
N
0.000
fgenesh1_pm.00118_#_26
Aspergillus carbonarius
fgenesh1_pm.00118_#_26
N
0.000
ACLA_033580
Aspergillus clavatus
CADACLAG00003610
N
0.000
AFUA_3G05570
Aspergillus fumigatus
CADAFUAG00005783
N
0.000
ANIA_03447
Aspergillus nidulans
CADANIAG00009587
N
0.000
An11g11070
Aspergillus niger
CADANGAG00009424
N
0.000
AO090020000028
Aspergillus oryzae
CADAORAG00006562
N
0.000
ATEG_08978
Aspergillus terreus
CADATEAG00006440
N
0.000
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.000
CIMG_10872
Coccidioides immitis
CIMG_10872
N
0.000
CPSG_06815
Coccidioides posadasii
CPSG_06815
N
0.000
estExt_fgenesh1_pg.C_160206
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_160206
N
0.000
HCAG_10294
Histoplasma capsulatum
HCAG_10294
N
0.000
KLTH0E11836g
Kluyveromyces thermotolerans
KLTH0E11836g
N
0.000
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.000
MCYG_08235
Microsporum canis
MCYG_08235
N
0.000
MGYG_05636
Microsporum gypseum
MGYG_05636
N
0.000
NFIA_071620
Neosartorya fischeri
CADNFIAG00006536
N
0.000
PABG_05614
Paracoccidioides brasiliensis
PABG_05614
N
0.000
Pc20g08250
Penicillium chrysogenum
Pc20g08250
N
0.000
PMAA_005110
Penicillium marneffei
PMAA_005110
N
0.000
EAT89389.2
Phaeosphaeria nodorum
EAT89389.2
N
0.000
PTRG_01963
Pyrenophora tritici repentis
PTRG_01963
N
0.000
SNOG_02658
Stagonospora nodorum
SNOG_02658
N
0.000
TEQG_01582
Trichophyton equinum
TEQG_01582
N
0.000
TERG_02518
Trichophyton rubrum
TERG_02518
N
0.000
GSTUMT00003772001
Tuber melanosporum
GSTUMT00003772001
N
0.000
UREG_06970
Uncinocarpus reesii
UREG_06970
N
0.000
YALI0B12540g
Yarrowia lipolytica
YALI0B12540g
N
0.000