CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
Al_scaffold_0769_1
(
Arabidopsis lyrata
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
Al_scaffold_0769_1
T24009_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Al_scaffold_0769_1
PUF
108
142
KMKGKVPEIAVSHVSSRVLQTCVKFCSQAEKDALF
Al_scaffold_0769_1
PUF
144
175
ELQPQFLNLASNKYAVHFIQKMLDGASKQQLA
Links
Other
PUF
family RBPs
Other
Arabidopsis lyrata
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002885119.1
Arabidopsis lyrata
Al_scaffold_0003_1757
N
0.985
Cucsa.069370
Cucumis sativus
Cucsa.069370
N
0.701
Glyma17g03290.1
Glycine max
Glyma17g03290.1
N
0.746
B9N014_POPTR
Populus trichocarpa
POPTR_0008s23200
N
0.729
B9HXE2_POPTR
Populus trichocarpa
POPTR_0010s00780
N
0.700
ppa002599m
Prunus persica
ppa002599m
N
0.791
29726.m004103
Ricinus communis
29726.m004103
N
0.700