CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BC1G_09648
(
Botrytis cinerea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BC1G_09648
T28243_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BC1T_09648
RRM
9
73
LYLGNLPRSATKADVEAHFNTHGTGEITEIKLMNGFGFIEYKDAMDARDVVPAFHGSDFMGERLT
BC1T_09648
RRM
105
171
QISGLPGETSWQDLKDFARQSSLDVVYSETGRDRDGKGSFVEFETAADLKTAVEKLDGREFKGARVT
Links
Other
RRM
family RBPs
Other
Botrytis cinerea
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XM_002873808.1
Arabidopsis lyrata
Al_scaffold_0006_1692
N
0.000
VAR3
Arabidopsis thaliana
AT5G17790-TAIR-G
N
0.000
BRADI2G53210
Brachypodium distachyon
BRADI2G53210
N
0.000
Cucsa.337020
Cucumis sativus
Cucsa.337020
N
0.000
Glyma19g29710.1
Glycine max
Glyma19g29710.1
N
0.000
Glyma03g00950.1
Glycine max
Glyma03g00950.1
N
0.000
LjT26C04.50.nd
Lotus japonicus
LjT26C04.50.nd
N
0.000
MDP0000224484
Malus x domestica
MDP0000224484
N
0.000
cassava12379.valid.m1
Manihot esculenta
cassava12379.valid.m1
N
0.000
Medtr7g103850
Medicago truncatula
Medtr7g103850
N
0.000
LOC_Os01g59980
Oryza sativa
LOC_Os01g59980
N
0.000
ppa001151m
Prunus persica
ppa001151m
N
0.000
29818.m000389
Ricinus communis
29818.m000389
N
0.000
SB03G037900
Sorghum bicolor
Sb03g037900
N
0.000
GSVIVG00029939001
Vitis vinifera
GSVIVG00029939001
N
0.000
GRMZM2G069106
Zea mays
GRMZM2G069106
N
0.000
GRMZM2G312244
Zea mays
GRMZM2G312244
N
0.000