VAR3 (Arabidopsis thaliana)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 AT5G17790-TAIR-G T26192_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT5G17790.1-P RanBP ZF 276 305
AT5G17790.1-P RanBP ZF 308 338

Links

Other RanBP ZF family RBPs
Other Arabidopsis thaliana RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002873808.1 Arabidopsis lyrata Al_scaffold_0006_1692 N 0.984
Cucsa.337020 Cucumis sativus Cucsa.337020 N 0.820
Medtr7g103850 Medicago truncatula Medtr7g103850 N 0.803
29818.m000389 Ricinus communis 29818.m000389 N 0.803
LjT26C04.50.nd Lotus japonicus LjT26C04.50.nd N 0.787
Glyma19g29710.1 Glycine max Glyma19g29710.1 N 0.787
cassava12379.valid.m1 Manihot esculenta cassava12379.valid.m1 N 0.787
ppa001151m Prunus persica ppa001151m N 0.770
PK08935.1 Cannabis sativa PK08935.1 N 0.770
BRADI2G53210 Brachypodium distachyon BRADI2G53210 N 0.770
GSVIVG00029939001 Vitis vinifera GSVIVG00029939001 N 0.770
MDP0000224484 Malus x domestica MDP0000224484 N 0.754
SB03G037900 Sorghum bicolor Sb03g037900 N 0.754
Glyma03g00950.1 Glycine max Glyma03g00950.1 N 0.754
GRMZM2G069106 Zea mays GRMZM2G069106 N 0.754
GRMZM2G312244 Zea mays GRMZM2G312244 N 0.754
LOC_Os01g59980 Oryza sativa LOC_Os01g59980 N 0.721