XM_002873808.1 (Arabidopsis lyrata)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 Al_scaffold_0006_1692 T26182_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0006_1692 RanBP ZF 276 305
Al_scaffold_0006_1692 RanBP ZF 308 338

Links

Other RanBP ZF family RBPs
Other Arabidopsis lyrata RBPs

17 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
VAR3 Arabidopsis thaliana AT5G17790-TAIR-G N 0.984
Cucsa.337020 Cucumis sativus Cucsa.337020 N 0.803
29818.m000389 Ricinus communis 29818.m000389 N 0.787
Medtr7g103850 Medicago truncatula Medtr7g103850 N 0.787
LjT26C04.50.nd Lotus japonicus LjT26C04.50.nd N 0.770
Glyma19g29710.1 Glycine max Glyma19g29710.1 N 0.770
cassava12379.valid.m1 Manihot esculenta cassava12379.valid.m1 N 0.770
BRADI2G53210 Brachypodium distachyon BRADI2G53210 N 0.770
GSVIVG00029939001 Vitis vinifera GSVIVG00029939001 N 0.754
GRMZM2G312244 Zea mays GRMZM2G312244 N 0.754
GRMZM2G069106 Zea mays GRMZM2G069106 N 0.754
SB03G037900 Sorghum bicolor Sb03g037900 N 0.754
PK08935.1 Cannabis sativa PK08935.1 N 0.754
ppa001151m Prunus persica ppa001151m N 0.754
Glyma03g00950.1 Glycine max Glyma03g00950.1 N 0.738
MDP0000224484 Malus x domestica MDP0000224484 N 0.738
LOC_Os01g59980 Oryza sativa LOC_Os01g59980 N 0.721