Cucsa.337020 (Cucumis sativus)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 Cucsa.337020 T27348_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.337020.1 RanBP ZF 268 297
Cucsa.337020.1 RanBP ZF 300 330
Cucsa.337020.2 RanBP ZF 268 295
Cucsa.337020.2 RanBP ZF 298 328
Cucsa.337020.3 RanBP ZF 2 31
Cucsa.337020.3 RanBP ZF 34 64

Links

Other RanBP ZF family RBPs
Other Cucumis sativus RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava12379.valid.m1 Manihot esculenta cassava12379.valid.m1 N 0.902
29818.m000389 Ricinus communis 29818.m000389 N 0.885
GSVIVG00029939001 Vitis vinifera GSVIVG00029939001 N 0.885
Glyma19g29710.1 Glycine max Glyma19g29710.1 N 0.869
ppa001151m Prunus persica ppa001151m N 0.852
Medtr7g103850 Medicago truncatula Medtr7g103850 N 0.852
PK08935.1 Cannabis sativa PK08935.1 N 0.836
LjT26C04.50.nd Lotus japonicus LjT26C04.50.nd N 0.836
Glyma03g00950.1 Glycine max Glyma03g00950.1 N 0.836
BRADI2G53210 Brachypodium distachyon BRADI2G53210 N 0.836
VAR3 Arabidopsis thaliana AT5G17790-TAIR-G N 0.820
MDP0000224484 Malus x domestica MDP0000224484 N 0.820
XM_002873808.1 Arabidopsis lyrata Al_scaffold_0006_1692 N 0.803
GRMZM2G069106 Zea mays GRMZM2G069106 N 0.787
GRMZM2G312244 Zea mays GRMZM2G312244 N 0.787
SB03G037900 Sorghum bicolor Sb03g037900 N 0.787
LOC_Os01g59980 Oryza sativa LOC_Os01g59980 N 0.770
MDP0000688583 Malus x domestica MDP0000688583 N 0.712
PK18374.1 Cannabis sativa PK18374.1 N 0.705