CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SCAF8
(
Anolis carolinensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSACAG00000005282
T34633_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000005280
RRM
470
536
LWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIGSKIIK
Links
Other
RRM
family RBPs
Other
Anolis carolinensis
RBPs
61 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1.C_31474
Agaricus bisporus
estExt_Genewise1.C_31474
N
0.000
AFLA_095620
Aspergillus flavus
CADAFLAG00009247
N
0.000
AO090113000083
Aspergillus oryzae
CADAORAG00011692
N
0.000
Cd36_81440
Candida dubliniensis
Cd36_81440
N
0.000
GLRG_05139
Colletotrichum graminicola
GLRG_05139
N
0.000
FGSG_10829
Fusarium graminearum
FGSG_10829
N
0.000
FOXG_12762
Fusarium oxysporum
FOXG_12762
N
0.000
FVEG_11503
Fusarium verticillioides
FVEG_11503
N
0.000
estExt_fgenesh2_pm.C_110045
Heterobasidion annosum
estExt_fgenesh2_pm.C_110045
N
0.000
e_gwh1.21.47.1
Laccaria bicolor
e_gwh1.21.47.1
N
0.000
mgf000781m
Mimulus guttatus
mgf000781m
N
0.000
EAT85557.1
Phaeosphaeria nodorum
EAT85557.1
N
0.000
XP_002493623.1
Pichia pastoris
XP_002493623.1
N
0.000
PTRG_00525
Pyrenophora tritici repentis
PTRG_00525
N
0.000
RO3G_08915
Rhizopus oryzae
RO3G_08915
N
0.000
Smp_099900
Schistosoma mansoni
Smp_099900
N
0.000
fgenesh2_kg.7_#_69_#_840_2_CFPN
Serpula lacrymans
fgenesh2_kg.7_#_69_#_840_2_CFPN
N
0.000
XP_001191490.1
Strongylocentrotus purpuratus
XP_001191490.1
N
0.000
XP_785608.2
Strongylocentrotus purpuratus
XP_785608.2
N
0.000
GSTUMT00005826001
Tuber melanosporum
GSTUMT00005826001
N
0.000