CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TRA2A
(
Anolis carolinensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSACAG00000013502
T34711_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000013286
RRM
119
189
LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANGMELDGRRIR
Links
Other
RRM
family RBPs
Other
Anolis carolinensis
RBPs
92 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI3G46470
Brachypodium distachyon
BRADI3G46470
N
0.000
BRADI4G32380
Brachypodium distachyon
BRADI4G32380
N
0.000
PK00840.1
Cannabis sativa
PK00840.1
I
0.000
chr5.CM0089.1140.nc
Lotus japonicus
chr5.CM0089.1140.nc
I
0.000
BGIOSIBCE007488
Oryza indica
BGIOSIBCE007488
N
0.000
LOC_Os02g35950
Oryza sativa
LOC_Os02g35950
N
0.000
LOC_Os04g37690
Oryza sativa
LOC_Os04g37690
N
0.000
LOC_Os09g28810
Oryza sativa
LOC_Os09g28810
I
0.000
SB06G018280
Sorghum bicolor
Sb06g018280
N
0.000
SB04G023540
Sorghum bicolor
Sb04g023540
N
0.000
Sb02g026820
Sorghum bicolor
Sb02g026820
I
0.000
GRMZM2G069678
Zea mays
GRMZM2G069678
N
0.000
GRMZM2G168163
Zea mays
GRMZM2G168163
I
0.000
GRMZM2G467907
Zea mays
GRMZM2G467907
I
0.000