PK00840.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK00840.1 T31619_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.740
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PK00840.1 RRM 28 98
PK00840.1 RRM 122 193
PK00840.1 RRM 232 296

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.913
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.913
ppa005903m Prunus persica ppa005903m I 0.913
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.909
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.909
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.904
MDP0000200455 Malus x domestica MDP0000200455 I 0.899
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.899
MDP0000136330 Malus x domestica MDP0000136330 I 0.899
30170.m014217 Ricinus communis 30170.m014217 I 0.894
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.885
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.870
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.861
MDP0000176892 Malus x domestica MDP0000176892 N 0.850
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.841
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.835
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.832
mgf012795m Mimulus guttatus mgf012795m I 0.827
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.803
mgf013285m Mimulus guttatus mgf013285m N 0.793
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.793
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.793
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.788
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.788
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.784
29801.m003218 Ricinus communis 29801.m003218 I 0.784
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.784
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.779
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.779
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.774
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.769
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.769
PK15272.1 Cannabis sativa PK15272.1 I 0.769
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.764
ppa005661m Prunus persica ppa005661m I 0.764
mgf011075m Mimulus guttatus mgf011075m I 0.764
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.754
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.754
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.745
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.740
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.740
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.740
mgf000380m Mimulus guttatus mgf000380m I 0.736
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.731
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.716
SB06G018280 Sorghum bicolor Sb06g018280 N 0.712
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.712
BRADI5G11810 Brachypodium distachyon BRADI5G11810 N 0.707
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.702
LOC_Os04g37690 Oryza sativa LOC_Os04g37690 N 0.702