chr5.CM0089.1140.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr5.CM0089.1140.nc T55896_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
chr5.CM0089.1140.nc RRM 87 155
chr5.CM0089.1140.nc RRM 180 251
chr5.CM0089.1140.nc RRM 285 349

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

52 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.957
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.952
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.937
30170.m014217 Ricinus communis 30170.m014217 I 0.918
ppa005903m Prunus persica ppa005903m I 0.913
PK00840.1 Cannabis sativa PK00840.1 I 0.909
MDP0000200455 Malus x domestica MDP0000200455 I 0.908
MDP0000136330 Malus x domestica MDP0000136330 I 0.908
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.899
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.894
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.889
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.882
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.880
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.865
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.865
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.864
MDP0000176892 Malus x domestica MDP0000176892 N 0.854
mgf012795m Mimulus guttatus mgf012795m I 0.811
mgf013285m Mimulus guttatus mgf013285m N 0.801
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.797
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.797
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.792
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.787
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.787
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.787
29801.m003218 Ricinus communis 29801.m003218 I 0.783
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.783
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.783
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.783
BRADI4G32380 Brachypodium distachyon BRADI4G32380 N 0.778
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.773
ppa005661m Prunus persica ppa005661m I 0.768
PK15272.1 Cannabis sativa PK15272.1 I 0.768
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.763
XM_002891318.1 Arabidopsis lyrata fgenesh2_kg.1__3846__AT1G47500.1 N 0.752
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.749
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.749
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.749
ATRBP47C Arabidopsis thaliana AT1G47490-TAIR-G N 0.748
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.744
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.744
mgf011075m Mimulus guttatus mgf011075m I 0.734
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.729
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.729
BRADI3G46470 Brachypodium distachyon BRADI3G46470 N 0.723
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.720
mgf000380m Mimulus guttatus mgf000380m I 0.720
SB06G018280 Sorghum bicolor Sb06g018280 N 0.718
LOC_Os04g37690 Oryza sativa LOC_Os04g37690 N 0.714
BRADI5G11810 Brachypodium distachyon BRADI5G11810 N 0.709
SB04G023540 Sorghum bicolor Sb04g023540 N 0.704