ENSCAFG00000010467 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000010467 T35089_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.732
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.732
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.732
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000030016 RRM 24 80
ENSCAFP00000030016 RRM 106 175

Links

Other RRM family RBPs
Other Canis familiaris RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R008803 Ailuropoda melanoleuca Ame_R008803 N 0.000
KRR1_BOVIN Bos taurus ENSBTAG00000011591 N 0.000
LOC100407700 Callithrix jacchus ENSCJAG00000001181 N 0.000
XM_846783.1 Canis familiaris ENSCAFG00000005665 N 0.000
KRR1 Cavia porcellus ENSCPOG00000014353 N 0.000
KRR1 Choloepus hoffmanni ENSCHOG00000009636 N 0.000
KRR1 Danio rerio ENSDARG00000011246 N 0.000
KRR1 Dasypus novemcinctus ENSDNOG00000015614 N 0.000
Krr1 Dipodomys ordii ENSDORG00000004614 N 0.000
LOC100050169 Equus caballus ENSECAG00000017498 N 0.000
KRR1 Erinaceus europaeus ENSEEUG00000001466 N 0.000
KRR1 Felis catus ENSFCAG00000005207 N 0.000
KRR1 Gasterosteus aculeatus ENSGACG00000019481 N 0.000
KRR1 Gorilla gorilla ENSGGOG00000013596 N 0.000
KRR1 Homo sapiens ENSG00000111615 N 0.000
eu2.Lbscf0025g00750 Laccaria bicolor eu2.Lbscf0025g00750 N 0.000
KRR1 Macaca mulatta ENSMMUG00000009640 N 0.000
KRR1 Macropus eugenii ENSMEUG00000011365 N 0.000
KRR1 Monodelphis domestica ENSMODG00000020451 N 0.000
KRR1 Ochotona princeps ENSOPRG00000011858 N 0.000
KRR1 Oryctolagus cuniculus ENSOCUG00000003925 N 0.000
KRR1 Otolemur garnettii ENSOGAG00000010313 N 0.000
XR_025480.1 Pan troglodytes ENSPTRG00000005238 N 0.000
ENSPPYG00000004785 Pongo pygmaeus ENSPPYG00000004785 N 0.000
KRR1 Pteropus vampyrus ENSPVAG00000000529 N 0.000
Smp_115060 Schistosoma mansoni Smp_115060 N 0.000
mis3 Schizosaccharomyces pombe SPBC25B2.05 N 0.000
KRR1 Sorex araneus ENSSARG00000009967 N 0.000
KRR1 Spermophilus tridecemlineatus ENSSTOG00000003620 N 0.000
KRR1 Sus scrofa ENSSSCG00000000520 N 0.000
KRR1 Tarsius syrichta ENSTSYG00000009394 N 0.000
KRR1 Tupaia belangeri ENSTBEG00000008145 N 0.000
KRR1 Tursiops truncatus ENSTTRG00000001661 N 0.000