ENSCAFG00000010467 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000010467 T35089_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.732
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.732
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.732
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000030016 RRM 24 80
ENSCAFP00000030016 RRM 106 175

Links

Other RRM family RBPs
Other Canis familiaris RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.784
ENSCAFG00000016707 Canis familiaris ENSCAFG00000016707 I 0.776
ENSCAFG00000013932 Canis familiaris ENSCAFG00000013932 I 0.761
ENSMMUG00000017582 Macaca mulatta ENSMMUG00000017582 N 0.740
ENSCAFG00000006386 Canis familiaris ENSCAFG00000006386 I 0.738
ENSCAFG00000017180 Canis familiaris ENSCAFG00000017180 N 0.736
ENSCAFG00000017240 Canis familiaris ENSCAFG00000017240 N 0.732
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.725
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.723
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.721
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.721
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.720
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.720
ENSCAFG00000017467 Canis familiaris ENSCAFG00000017467 I 0.719
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.718
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.716
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.715
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.715
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.715
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.715
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.715
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.715
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.715
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.715
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.715
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.715
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.715
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.715
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.715
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.715
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.715
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.715
HNRNPA1 Homo sapiens ENSG00000135486 D 0.715
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.715
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.715
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.715
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.715
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.715
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.715
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.715
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.715
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.715
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.715
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.715
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.713
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.709
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.708
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.708
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.708
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.708
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.708
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.708
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.708
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.708
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.708
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.706
ENSBTAG00000012502 Bos taurus ENSBTAG00000012502 I 0.701
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.701
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.701
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.701
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.701
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.701
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.701
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.701
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.701
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.701
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.701
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.701
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.701
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.701