CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.11.101.1
(
Capitella teleta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.11.101.1
T49691_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.11.101.1
RRM
191
264
LYLGNINPAMSEQQLCECFGRFGPLASVKIMWPRSEEERSRNRNCGFVAFMNRKDGERALAALQGKDVQAYEMK
Links
Other
RRM
family RBPs
Other
Capitella teleta
RBPs
61 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
DGIL_AUG5s11505g3t1
Acyrtosiphon pisum
DGIL_AUG5s11505g3t1
N
0.716
DGIL_AUG5s8618g4t1
Acyrtosiphon pisum
DGIL_AUG5s8618g4t1
N
0.716
AAEL012045
Aedes aegypti
AAEL012045
N
0.716
Ame_R004744
Ailuropoda melanoleuca
Ame_R004744
N
0.707
U2SURP
Anolis carolinensis
ENSACAG00000009512
N
0.707
AGAP005006
Anopheles gambiae
AGAP005006
N
0.730
amel4_ncbi_hmm17771
Apis mellifera
amel4_ncbi_hmm17771
N
0.716
BGIBMGA003602
Bombyx mori
BGIBMGA003602
N
0.703
Q148C6_BOVIN
Bos taurus
ENSBTAG00000009154
N
0.707
LOC100411013
Callithrix jacchus
ENSCJAG00000001639
N
0.707
U2SURP
Canis familiaris
ENSCAFG00000007973
N
0.707
U2SURP
Cavia porcellus
ENSCPOG00000011656
N
0.707
U2SURP
Choloepus hoffmanni
ENSCHOG00000001300
N
0.707
CpipJ_CPIJ014539
Culex pipiens
CpipJ_CPIJ014539
N
0.743
CPIJ014539
Culex quinquefasciatus
CPIJ014539
N
0.743
zgc:163098
Danio rerio
ENSDARG00000078911
N
0.703
estExt_Genewise1.C_650028
Daphnia pulex
estExt_Genewise1.C_650028
N
0.716
U2SURP
Dasypus novemcinctus
ENSDNOG00000006427
N
0.707
GG22076
Drosophila erecta
FBgn0114251
N
0.703
GH20523
Drosophila grimshawi
FBgn0127986
N
0.703
CG9346
Drosophila melanogaster
FBgn0034572
N
0.703
GI21069
Drosophila mojavensis
FBgn0143801
N
0.703
GM15794
Drosophila sechellia
FBgn0170710
N
0.703
GD11555
Drosophila simulans
FBgn0183296
N
0.703
GJ21992
Drosophila virilis
FBgn0209106
N
0.703
GK22959
Drosophila willistoni
FBgn0224921
N
0.716
GE12157
Drosophila yakuba
FBgn0229923
N
0.703
U2SURP
Echinops telfairi
ENSETEG00000000149
N
0.707
LOC100051188
Equus caballus
ENSECAG00000022460
N
0.707
U2SURP
Erinaceus europaeus
ENSEEUG00000013553
N
0.707
LOC424773
Gallus gallus
ENSGALG00000002612
N
0.707
U2SURP
Gorilla gorilla
ENSGGOG00000005563
N
0.707
U2SURP
Homo sapiens
ENSG00000163714
N
0.707
XP_002166978.1
Hydra magnipapillata
XP_002166978.1
N
0.703
e_gw1.134.6.1
Lottia gigantea
e_gw1.134.6.1
N
0.770
U2SURP
Loxodonta africana
ENSLAFG00000002566
N
0.707
U2SURP
Macaca mulatta
ENSMMUG00000002775
N
0.707
U2SURP
Macropus eugenii
ENSMEUG00000000127
N
0.707
U2SURP
Meleagris gallopavo
ENSMGAG00000006549
N
0.707
ENSMODG00000010847
Monodelphis domestica
ENSMODG00000010847
N
0.703
XM_001372164.1
Monodelphis domestica
ENSMODG00000021242
N
0.707
2610101N10Rik
Mus musculus
ENSMUSG00000032407
N
0.707
U2SURP
Myotis lucifugus
ENSMLUG00000002920
N
0.707
nasonia_NCBI_hmm274824
Nasonia vitripennis
nasonia_NCBI_hmm274824
N
0.716
U2SURP
Ornithorhynchus anatinus
ENSOANG00000003644
N
0.707
U2SURP
Oryctolagus cuniculus
ENSOCUG00000012121
N
0.707
U2SURP
Pan troglodytes
ENSPTRG00000015489
N
0.707
PHUM176690
Pediculus humanus
PHUM176690
N
0.716
ENSPPYG00000014178
Pongo pygmaeus
ENSPPYG00000014178
N
0.707
U2SURP
Procavia capensis
ENSPCAG00000015251
N
0.707
U2SURP
Pteropus vampyrus
ENSPVAG00000016077
N
0.707
RGD1307882
Rattus norvegicus
ENSRNOG00000008607
N
0.707
Sjc_0023880
Schistosoma japonicum
Sjc_0023880
N
0.770
Smp_161730
Schistosoma mansoni
Smp_161730
N
0.770
U2SURP
Sus scrofa
ENSSSCG00000011684
N
0.707
U2SURP
Taeniopygia guttata
ENSTGUG00000008687
N
0.707
amel4_ncbi_hmm17771
Tribolium castaneum
amel4_ncbi_hmm17771
N
0.716
U2SURP
Tupaia belangeri
ENSTBEG00000016313
N
0.707
U2SURP
Tursiops truncatus
ENSTTRG00000017170
N
0.707
U2SURP
Vicugna pacos
ENSVPAG00000004697
N
0.707
sr140
Xenopus tropicalis
ENSXETG00000022133
N
0.720