LjT23J20.20.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LjT23J20.20.nc T57279_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjT23J20.20.nc RRM 28 97
LjT23J20.20.nc RRM 342 415
LjT23J20.20.nc RRM 539 603
LjT23J20.20.nc RRM 659 734
LjT23J20.20.nc RRM 759 827

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

10 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PK01923.1 Cannabis sativa PK01923.1 N 0.733
Cucsa.107130 Cucumis sativus Cucsa.107130 N 0.763
Glyma13g09970.1 Glycine max Glyma13g09970.1 N 0.794
LjT23J20.40.nc Lotus japonicus LjT23J20.40.nc N 0.831
MDP0000289531 Malus x domestica MDP0000289531 N 0.732
cassava28560.m1 Manihot esculenta cassava28560.m1 N 0.774
mgf006636m Mimulus guttatus mgf006636m N 0.743
mgf010702m Mimulus guttatus mgf010702m N 0.740
B9GY53_POPTR Populus trichocarpa POPTR_0003s14940 N 0.706
GSVIVG00012163001 Vitis vinifera GSVIVG00012163001 N 0.709