B9GY53_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0003s14940 T45489_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s14940.1 RRM 1 40
POPTR_0003s14940.1 RRM 269 339
POPTR_0003s14940.1 RRM 463 527
POPTR_0003s14940.1 RRM 584 659
POPTR_0003s14940.1 RRM 684 752

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

12 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00012163001 Vitis vinifera GSVIVG00012163001 N 0.863
ppa001609m Prunus persica ppa001609m N 0.813
cassava28560.m1 Manihot esculenta cassava28560.m1 N 0.809
mgf002385m Mimulus guttatus mgf002385m N 0.779
Glyma13g09970.1 Glycine max Glyma13g09970.1 N 0.753
Cucsa.107130 Cucumis sativus Cucsa.107130 N 0.749
XM_002869927.1 Arabidopsis lyrata Al_scaffold_0007_2200 N 0.745
mgf006636m Mimulus guttatus mgf006636m N 0.721
mgf010702m Mimulus guttatus mgf010702m N 0.718
MDP0000289531 Malus x domestica MDP0000289531 N 0.712
PK01923.1 Cannabis sativa PK01923.1 N 0.711
LjT23J20.20.nc Lotus japonicus LjT23J20.20.nc N 0.706