CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma13g09970.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma13g09970.1
T52823_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma13g09970.1
RRM
4
73
ICVKNLPKDVAEDELREFFSGKGGIITDAKLMRTKDGKSRQFAFIGYRTEDEAQEAIRYFNKNFLRTSRI
Glyma13g09970.1
RRM
292
362
LFVRNLPYTTTEEELEEHFSRFGSVSQVHLVVNKDTKRSKGIAYILYTAPNIAARAQEELDNSIFQGRLLH
Glyma13g09970.1
RRM
487
551
LLVKNLPYGSTENELAKMFGKFGSLDKIILPPTKTLALVVFLEPVEARAAFRGLAYKRFKDAPLY
Glyma13g09970.1
RRM
607
682
LFVKNLNFKTIDESLRKHLTEHMKEGSILSVKVKKHLKNGKNVSMGFGFVEFDSPETATNVCKDLQGTVLDSHALI
Glyma13g09970.1
RRM
707
775
LLIKNVAFEATEKDLRRLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLV
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava28560.m1
Manihot esculenta
cassava28560.m1
N
0.847
LjT23J20.20.nc
Lotus japonicus
LjT23J20.20.nc
N
0.794
Cucsa.107130
Cucumis sativus
Cucsa.107130
N
0.790
MDP0000289531
Malus x domestica
MDP0000289531
N
0.778
LjT23J20.40.nc
Lotus japonicus
LjT23J20.40.nc
N
0.769
PK01923.1
Cannabis sativa
PK01923.1
N
0.768
GSVIVG00012163001
Vitis vinifera
GSVIVG00012163001
N
0.764
mgf006636m
Mimulus guttatus
mgf006636m
N
0.761
mgf010702m
Mimulus guttatus
mgf010702m
N
0.761
B9GY53_POPTR
Populus trichocarpa
POPTR_0003s14940
N
0.753
AT4G19610
Arabidopsis thaliana
AT4G19610-TAIR-G
N
0.722
ppa001609m
Prunus persica
ppa001609m
N
0.722