Smp_069870 (Schistosoma mansoni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Smp_069870 T58637_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.707
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.707
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.707
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.707
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.707
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.707
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.707
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Smp_069870 RRM 60 131
Smp_069870 RRM 256 322

Links

Other RRM family RBPs
Other Schistosoma mansoni RBPs

32 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.707
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.707
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.707
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.707
SNRPA Canis familiaris ENSCAFG00000005091 I 0.707
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.721
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.707
snrpa Danio rerio ENSDARG00000018890 I 0.714
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.707
LOC100068274 Equus caballus ENSECAG00000013141 I 0.707
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.700
SNRPA Felis catus ENSFCAG00000016209 I 0.707
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.707
SNRPA Homo sapiens ENSG00000077312 D 0.707
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.707
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.714
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.707
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.707
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.707
SNRPA Oryzias latipes ENSORLG00000006536 I 0.707
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.707
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.707
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.707
SNRPA Procavia capensis ENSPCAG00000012325 I 0.707
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.707
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.707
SNRPA Sus scrofa ENSSSCG00000002998 I 0.707
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.707
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.700
AAH44979 Xenopus laevis AAH44979 I 0.700
CAA41021 Xenopus laevis CAA41021 I 0.700
P45429 Xenopus laevis P45429 I 0.700