snrpa (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000018890 T36096_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.949
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.949
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.949
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.949
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.949
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.949
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.949
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.949
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.855
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000027914 RRM 12 83
ENSDARP00000027914 RRM 209 274

Links

Other RRM family RBPs
Other Danio rerio RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.971
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.964
SNRPA Procavia capensis ENSPCAG00000012325 I 0.957
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.957
SNRPA Oryzias latipes ENSORLG00000006536 I 0.957
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.949
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.949
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.949
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.949
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.949
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.949
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.949
P45429 Xenopus laevis P45429 I 0.949
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.949
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.949
LOC100068274 Equus caballus ENSECAG00000013141 I 0.949
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.949
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.949
SNRPA Sus scrofa ENSSSCG00000002998 I 0.949
CAA41021 Xenopus laevis CAA41021 I 0.949
AAH44979 Xenopus laevis AAH44979 I 0.949
SNRPA Canis familiaris ENSCAFG00000005091 I 0.949
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.949
SNRPA Felis catus ENSFCAG00000016209 I 0.949
SNRPA Homo sapiens ENSG00000077312 D 0.949
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.949
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.949
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.949
Snrpa Mus musculus ENSMUSG00000061479 I 0.942
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.935
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.935
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.935
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.928
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.899
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.899
SNRPA Echinops telfairi ENSETEG00000019205 I 0.891
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.871
GH24608 Drosophila grimshawi FBgn0132064 I 0.862
GJ16850 Drosophila virilis FBgn0204029 I 0.862
snf Drosophila mojavensis FBgn0069598 I 0.862
GK25839 Drosophila willistoni FBgn0227798 I 0.862
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.856
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.855
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.855
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.855
GL14287 Drosophila persimilis FBgn0151892 I 0.855
GM12396 Drosophila sechellia FBgn0167333 I 0.855
GG18748 Drosophila erecta FBgn0110957 I 0.855
GF21334 Drosophila ananassae FBgn0098336 I 0.855
snf Drosophila melanogaster FBgn0003449 D 0.855
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.855
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.855
GE16390 Drosophila yakuba FBgn0233919 I 0.855
AAEL002980 Aedes aegypti AAEL002980 I 0.855
AAEL014167 Aedes aegypti AAEL014167 I 0.855
AGAP011637 Anopheles gambiae AGAP011637 I 0.848
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.848
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.841
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.841
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.841
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.833
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.833
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.826
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.819
Gm5145 Mus musculus ENSMUSG00000071273 I 0.797
SNRPA Microcebus murinus ENSMICG00000009766 I 0.797
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.791
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.791
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.791
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.790
105398 Helobdella robusta 105398 I 0.790
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.784
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.784
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.784
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.784
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.784
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.784
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.784
LOC100050830 Equus caballus ENSECAG00000018407 I 0.784
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.784
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.784
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.784
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.784
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.784
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.784
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.784
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.784
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.784
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.784
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.784
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.784
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.784
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.784
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.784
SNRPB2 Homo sapiens ENSG00000125870 I 0.784
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.784
AAH84107 Xenopus laevis AAH84107 I 0.783
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.777
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.777
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.777
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.777
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.777
AAH72799 Xenopus laevis AAH72799 I 0.770
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.768
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.763
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.761
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.754
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.748
snrpb2 Danio rerio ENSDARG00000039424 I 0.746
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.746
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.746
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.739
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.739
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.732
186191 Helobdella robusta 186191 I 0.732
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.725
snrpa Xenopus tropicalis ENSXETG00000002585 N 0.717
Smp_069870 Schistosoma mansoni Smp_069870 I 0.714
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.712
LOAG_02293 Loa loa LOAG_02293 I 0.710
WUBG_10715 Wuchereria bancrofti WUBG_10715 I 0.710
Bm1_37765 Brugia malayi Bm1_37765 I 0.710
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.705
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.705