CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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snrpa
(
Danio rerio
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDARG00000018890
T36096_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.949
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.949
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.949
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.949
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.949
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.949
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.949
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.949
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.855
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000027914
RRM
12
83
IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMR
ENSDARP00000027914
RRM
209
274
LFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQGFKITQSNAM
Links
Other
RRM
family RBPs
Other
Danio rerio
RBPs
124 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.971
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.964
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.957
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.957
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.957
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.949
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.949
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.949
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.949
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.949
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.949
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.949
P45429
Xenopus laevis
P45429
I
0.949
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.949
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.949
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.949
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.949
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.949
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.949
CAA41021
Xenopus laevis
CAA41021
I
0.949
AAH44979
Xenopus laevis
AAH44979
I
0.949
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.949
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.949
SNRPA
Felis catus
ENSFCAG00000016209
I
0.949
SNRPA
Homo sapiens
ENSG00000077312
D
0.949
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.949
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.949
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.949
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.942
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.935
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.935
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.935
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.928
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.899
SNRPA
Oryctolagus cuniculus
ENSOCUG00000024618
I
0.899
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.891
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.871
GH24608
Drosophila grimshawi
FBgn0132064
I
0.862
GJ16850
Drosophila virilis
FBgn0204029
I
0.862
snf
Drosophila mojavensis
FBgn0069598
I
0.862
GK25839
Drosophila willistoni
FBgn0227798
I
0.862
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.856
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.855
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.855
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.855
GL14287
Drosophila persimilis
FBgn0151892
I
0.855
GM12396
Drosophila sechellia
FBgn0167333
I
0.855
GG18748
Drosophila erecta
FBgn0110957
I
0.855
GF21334
Drosophila ananassae
FBgn0098336
I
0.855
snf
Drosophila melanogaster
FBgn0003449
D
0.855
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.855
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.855
GE16390
Drosophila yakuba
FBgn0233919
I
0.855
AAEL002980
Aedes aegypti
AAEL002980
I
0.855
AAEL014167
Aedes aegypti
AAEL014167
I
0.855
AGAP011637
Anopheles gambiae
AGAP011637
I
0.848
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.848
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.841
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.841
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.841
SNRPA
Loxodonta africana
ENSLAFG00000026568
I
0.833
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.833
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.826
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.819
Gm5145
Mus musculus
ENSMUSG00000071273
I
0.797
SNRPA
Microcebus murinus
ENSMICG00000009766
I
0.797
SNRPB2
Taeniopygia guttata
ENSTGUG00000002415
I
0.791
SNRPB2
Meleagris gallopavo
ENSMGAG00000006135
I
0.791
SNRPB2
Gallus gallus
ENSGALG00000008729
I
0.791
DGIL_AUG5s14106g2t1
Acyrtosiphon pisum
DGIL_AUG5s14106g2t1
I
0.790
105398
Helobdella robusta
105398
I
0.790
LOC477148
Canis familiaris
ENSCAFG00000005520
I
0.784
SNRPB2
Cavia porcellus
ENSCPOG00000005014
I
0.784
Q3T0M6_BOVIN
Bos taurus
ENSBTAG00000027506
I
0.784
LOC100408625
Callithrix jacchus
ENSCJAG00000004811
I
0.784
Ame_R017767
Ailuropoda melanoleuca
Ame_R017767
I
0.784
SNRPB2
Tursiops truncatus
ENSTTRG00000006395
I
0.784
SNRPB2
Sorex araneus
ENSSARG00000002681
I
0.784
LOC100050830
Equus caballus
ENSECAG00000018407
I
0.784
SNRPB2
Ornithorhynchus anatinus
ENSOANG00000001237
I
0.784
SNRPB2
Sus scrofa
ENSSSCG00000007081
I
0.784
Snrpb2
Rattus norvegicus
ENSRNOG00000004967
I
0.784
Snrpb2
Mus musculus
ENSMUSG00000008333
I
0.784
ENSPPYG00000010723
Pongo pygmaeus
ENSPPYG00000010723
I
0.784
SNRPB2
Otolemur garnettii
ENSOGAG00000015146
I
0.784
SNRPB2
Pan troglodytes
ENSPTRG00000013271
I
0.784
SNRPB2
Spermophilus tridecemlineatus
ENSSTOG00000009198
I
0.784
SNRPB2
Ochotona princeps
ENSOPRG00000011587
I
0.784
SNRPB2
Microcebus murinus
ENSMICG00000015404
I
0.784
SNRPB2
Loxodonta africana
ENSLAFG00000008775
I
0.784
SNRPB2
Tupaia belangeri
ENSTBEG00000012892
I
0.784
SNRPB2
Tarsius syrichta
ENSTSYG00000008857
I
0.784
SNRPB2
Gorilla gorilla
ENSGGOG00000003937
I
0.784
SNRPB2
Macaca mulatta
ENSMMUG00000014493
I
0.784
SNRPB2
Homo sapiens
ENSG00000125870
I
0.784
SNRPB2
Vicugna pacos
ENSVPAG00000004557
I
0.784
AAH84107
Xenopus laevis
AAH84107
I
0.783
SNRPB2
Myotis lucifugus
ENSMLUG00000008163
I
0.777
SNRPB2
Procavia capensis
ENSPCAG00000003156
I
0.777
SNRPB2
Oryctolagus cuniculus
ENSOCUG00000001427
I
0.777
snrpb2
Xenopus tropicalis
ENSXETG00000003550
I
0.777
SNRPB2
Anolis carolinensis
ENSACAG00000000582
I
0.777
AAH72799
Xenopus laevis
AAH72799
I
0.770
e_gw1.1.761.1
Trichoplax adhaerens
e_gw1.1.761.1
I
0.768
SNRPB2
Monodelphis domestica
ENSMODG00000005392
I
0.763
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.761
LOC100407601
Callithrix jacchus
ENSCJAG00000023308
I
0.754
SNRPB2
Pteropus vampyrus
ENSPVAG00000016140
I
0.748
snrpb2
Danio rerio
ENSDARG00000039424
I
0.746
SNRPB2
Tetraodon nigroviridis
ENSTNIG00000002735
I
0.746
SNRPB2
Takifugu rubripes
ENSTRUG00000009060
I
0.746
SNRPB2
Gasterosteus aculeatus
ENSGACG00000019682
I
0.739
SNRPB2
Echinops telfairi
ENSETEG00000001085
I
0.739
LOC100394904
Callithrix jacchus
ENSCJAG00000022477
I
0.732
186191
Helobdella robusta
186191
I
0.732
SNRPB2
Oryzias latipes
ENSORLG00000019421
I
0.725
snrpa
Xenopus tropicalis
ENSXETG00000002585
N
0.717
Smp_069870
Schistosoma mansoni
Smp_069870
I
0.714
Aqu1.229782
Amphimedon queenslandica
Aqu1.229782
I
0.712
LOAG_02293
Loa loa
LOAG_02293
I
0.710
WUBG_10715
Wuchereria bancrofti
WUBG_10715
I
0.710
Bm1_37765
Brugia malayi
Bm1_37765
I
0.710
XP_001202981.1
Strongylocentrotus purpuratus
XP_001202981.1
I
0.705
XP_789234.2
Strongylocentrotus purpuratus
XP_789234.2
I
0.705