CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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nasonia_NCBI_hmm682213
(
Nasonia vitripennis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
nasonia_NCBI_hmm682213
T32286_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.899
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.871
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.871
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.871
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.871
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.871
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.871
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.871
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.871
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm682213
RRM
9
80
IYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIASATNALRSMQGFPFYDKPMR
nasonia_NCBI_hmm682213
RRM
158
224
LFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMK
Links
Other
RRM
family RBPs
Other
Nasonia vitripennis
RBPs
125 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm2739
Apis mellifera
amel4_ncbi_hmm2739
I
0.986
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.928
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.921
GK25839
Drosophila willistoni
FBgn0227798
I
0.906
GJ16850
Drosophila virilis
FBgn0204029
I
0.906
snf
Drosophila mojavensis
FBgn0069598
I
0.906
AAEL014167
Aedes aegypti
AAEL014167
I
0.906
AAEL002980
Aedes aegypti
AAEL002980
I
0.906
GH24608
Drosophila grimshawi
FBgn0132064
I
0.906
GL14287
Drosophila persimilis
FBgn0151892
I
0.899
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.899
snf
Drosophila melanogaster
FBgn0003449
D
0.899
GF21334
Drosophila ananassae
FBgn0098336
I
0.899
GG18748
Drosophila erecta
FBgn0110957
I
0.899
GM12396
Drosophila sechellia
FBgn0167333
I
0.899
GE16390
Drosophila yakuba
FBgn0233919
I
0.899
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.899
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.892
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.892
AGAP011637
Anopheles gambiae
AGAP011637
I
0.885
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.885
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.885
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.878
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.878
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.871
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.871
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.871
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.871
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.871
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.871
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.871
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.871
DGIL_AUG5s14106g2t1
Acyrtosiphon pisum
DGIL_AUG5s14106g2t1
I
0.871
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.871
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.871
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.871
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.871
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.871
snrpa
Danio rerio
ENSDARG00000018890
I
0.871
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.871
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.871
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.871
SNRPA
Felis catus
ENSFCAG00000016209
I
0.871
SNRPA
Homo sapiens
ENSG00000077312
D
0.871
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.871
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.871
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.871
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.863
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.863
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.863
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.863
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.863
AAH44979
Xenopus laevis
AAH44979
I
0.856
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.856
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.856
CAA41021
Xenopus laevis
CAA41021
I
0.856
P45429
Xenopus laevis
P45429
I
0.856
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.849
SNRPB2
Gallus gallus
ENSGALG00000008729
I
0.842
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.842
SNRPB2
Taeniopygia guttata
ENSTGUG00000002415
I
0.842
SNRPB2
Meleagris gallopavo
ENSMGAG00000006135
I
0.842
Ame_R017767
Ailuropoda melanoleuca
Ame_R017767
I
0.835
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.835
LOC477148
Canis familiaris
ENSCAFG00000005520
I
0.835
LOC100408625
Callithrix jacchus
ENSCJAG00000004811
I
0.835
SNRPB2
Tupaia belangeri
ENSTBEG00000012892
I
0.835
SNRPB2
Vicugna pacos
ENSVPAG00000004557
I
0.835
SNRPB2
Cavia porcellus
ENSCPOG00000005014
I
0.835
LOC100050830
Equus caballus
ENSECAG00000018407
I
0.835
SNRPB2
Tarsius syrichta
ENSTSYG00000008857
I
0.835
SNRPB2
Tursiops truncatus
ENSTTRG00000006395
I
0.835
Q3T0M6_BOVIN
Bos taurus
ENSBTAG00000027506
I
0.835
Snrpb2
Rattus norvegicus
ENSRNOG00000004967
I
0.835
SNRPB2
Macaca mulatta
ENSMMUG00000014493
I
0.835
SNRPB2
Ochotona princeps
ENSOPRG00000011587
I
0.835
SNRPB2
Microcebus murinus
ENSMICG00000015404
I
0.835
SNRPB2
Otolemur garnettii
ENSOGAG00000015146
I
0.835
SNRPB2
Loxodonta africana
ENSLAFG00000008775
I
0.835
SNRPB2
Ornithorhynchus anatinus
ENSOANG00000001237
I
0.835
SNRPB2
Gorilla gorilla
ENSGGOG00000003937
I
0.835
Snrpb2
Mus musculus
ENSMUSG00000008333
I
0.835
ENSPPYG00000010723
Pongo pygmaeus
ENSPPYG00000010723
I
0.835
SNRPB2
Sorex araneus
ENSSARG00000002681
I
0.835
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.835
SNRPB2
Homo sapiens
ENSG00000125870
I
0.835
SNRPB2
Pan troglodytes
ENSPTRG00000013271
I
0.835
SNRPB2
Spermophilus tridecemlineatus
ENSSTOG00000009198
I
0.835
SNRPB2
Sus scrofa
ENSSSCG00000007081
I
0.835
SNRPB2
Anolis carolinensis
ENSACAG00000000582
I
0.827
SNRPB2
Myotis lucifugus
ENSMLUG00000008163
I
0.827
SNRPA
Oryctolagus cuniculus
ENSOCUG00000024618
I
0.827
SNRPB2
Oryctolagus cuniculus
ENSOCUG00000001427
I
0.827
SNRPB2
Procavia capensis
ENSPCAG00000003156
I
0.827
snrpb2
Xenopus tropicalis
ENSXETG00000003550
I
0.827
AAH72799
Xenopus laevis
AAH72799
I
0.820
SNRPB2
Monodelphis domestica
ENSMODG00000005392
I
0.813
SNRPB2
Pteropus vampyrus
ENSPVAG00000016140
I
0.799
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.799
LOC100407601
Callithrix jacchus
ENSCJAG00000023308
I
0.791
AAH84107
Xenopus laevis
AAH84107
I
0.791
snrpb2
Danio rerio
ENSDARG00000039424
I
0.784
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.777
SNRPB2
Takifugu rubripes
ENSTRUG00000009060
I
0.777
SNRPB2
Tetraodon nigroviridis
ENSTNIG00000002735
I
0.777
SNRPB2
Gasterosteus aculeatus
ENSGACG00000019682
I
0.777
SNRPB2
Echinops telfairi
ENSETEG00000001085
I
0.777
e_gw1.1.761.1
Trichoplax adhaerens
e_gw1.1.761.1
I
0.777
Aqu1.229782
Amphimedon queenslandica
Aqu1.229782
I
0.777
105398
Helobdella robusta
105398
I
0.777
SNRPA
Loxodonta africana
ENSLAFG00000026568
I
0.777
SNRPB2
Oryzias latipes
ENSORLG00000019421
I
0.770
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.763
LOC100394904
Callithrix jacchus
ENSCJAG00000022477
I
0.755
XP_001202981.1
Strongylocentrotus purpuratus
XP_001202981.1
I
0.748
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.748
XP_789234.2
Strongylocentrotus purpuratus
XP_789234.2
I
0.748
SNRPA
Microcebus murinus
ENSMICG00000009766
I
0.741
LOAG_02293
Loa loa
LOAG_02293
I
0.734
Bm1_37765
Brugia malayi
Bm1_37765
I
0.734
WUBG_10715
Wuchereria bancrofti
WUBG_10715
I
0.734
ENSTGUG00000016203
Taeniopygia guttata
ENSTGUG00000016203
I
0.727
186191
Helobdella robusta
186191
I
0.727
Gm5145
Mus musculus
ENSMUSG00000071273
I
0.719
Smp_069870
Schistosoma mansoni
Smp_069870
I
0.707