nasonia_NCBI_hmm682213 (Nasonia vitripennis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 nasonia_NCBI_hmm682213 T32286_0.6 DroSpeGe (2008-Jul-18)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.899
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.871
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.871
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.871
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.871
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.871
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.871
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.871
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.871
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
nasonia_NCBI_hmm682213 RRM 9 80
nasonia_NCBI_hmm682213 RRM 158 224

Links

Other RRM family RBPs
Other Nasonia vitripennis RBPs

125 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.986
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.928
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.921
GK25839 Drosophila willistoni FBgn0227798 I 0.906
GJ16850 Drosophila virilis FBgn0204029 I 0.906
snf Drosophila mojavensis FBgn0069598 I 0.906
AAEL014167 Aedes aegypti AAEL014167 I 0.906
AAEL002980 Aedes aegypti AAEL002980 I 0.906
GH24608 Drosophila grimshawi FBgn0132064 I 0.906
GL14287 Drosophila persimilis FBgn0151892 I 0.899
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.899
snf Drosophila melanogaster FBgn0003449 D 0.899
GF21334 Drosophila ananassae FBgn0098336 I 0.899
GG18748 Drosophila erecta FBgn0110957 I 0.899
GM12396 Drosophila sechellia FBgn0167333 I 0.899
GE16390 Drosophila yakuba FBgn0233919 I 0.899
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.899
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.892
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.892
AGAP011637 Anopheles gambiae AGAP011637 I 0.885
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.885
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.885
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.878
SNRPA Procavia capensis ENSPCAG00000012325 I 0.878
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.871
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.871
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.871
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.871
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.871
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.871
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.871
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.871
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.871
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.871
SNRPA Sus scrofa ENSSSCG00000002998 I 0.871
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.871
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.871
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.871
snrpa Danio rerio ENSDARG00000018890 I 0.871
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.871
LOC100068274 Equus caballus ENSECAG00000013141 I 0.871
SNRPA Erinaceus europaeus ENSEEUG00000015149 I 0.871
SNRPA Felis catus ENSFCAG00000016209 I 0.871
SNRPA Homo sapiens ENSG00000077312 D 0.871
SNRPA Canis familiaris ENSCAFG00000005091 I 0.871
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.871
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.871
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.863
SNRPA Oryzias latipes ENSORLG00000006536 I 0.863
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.863
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.863
Snrpa Mus musculus ENSMUSG00000061479 I 0.863
AAH44979 Xenopus laevis AAH44979 I 0.856
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.856
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.856
CAA41021 Xenopus laevis CAA41021 I 0.856
P45429 Xenopus laevis P45429 I 0.856
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.849
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.842
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.842
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.842
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.842
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.835
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.835
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.835
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.835
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.835
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.835
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.835
LOC100050830 Equus caballus ENSECAG00000018407 I 0.835
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.835
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.835
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.835
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.835
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.835
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.835
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.835
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.835
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.835
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.835
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.835
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.835
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.835
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.835
SNRPA Echinops telfairi ENSETEG00000019205 I 0.835
SNRPB2 Homo sapiens ENSG00000125870 I 0.835
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.835
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.835
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.835
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.827
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.827
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.827
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.827
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.827
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.827
AAH72799 Xenopus laevis AAH72799 I 0.820
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.813
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.799
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.799
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.791
AAH84107 Xenopus laevis AAH84107 I 0.791
snrpb2 Danio rerio ENSDARG00000039424 I 0.784
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.777
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.777
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.777
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.777
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.777
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.777
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.777
105398 Helobdella robusta 105398 I 0.777
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.777
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.770
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.763
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.755
XP_001202981.1 Strongylocentrotus purpuratus XP_001202981.1 I 0.748
SNRPB2 Macropus eugenii ENSMEUG00000016552 I 0.748
XP_789234.2 Strongylocentrotus purpuratus XP_789234.2 I 0.748
SNRPA Microcebus murinus ENSMICG00000009766 I 0.741
LOAG_02293 Loa loa LOAG_02293 I 0.734
Bm1_37765 Brugia malayi Bm1_37765 I 0.734
WUBG_10715 Wuchereria bancrofti WUBG_10715 I 0.734
ENSTGUG00000016203 Taeniopygia guttata ENSTGUG00000016203 I 0.727
186191 Helobdella robusta 186191 I 0.727
Gm5145 Mus musculus ENSMUSG00000071273 I 0.719
Smp_069870 Schistosoma mansoni Smp_069870 I 0.707