CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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amel4_ncbi_hmm2739
(
Apis mellifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
amel4_ncbi_hmm2739
T31899_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
snf
M136_0.6
Drosophila melanogaster
UWGCAC
RNAcompete
Ray et al.(2013)
RNCMPT00145
0.885
SNRPA
M348_0.6
Homo sapiens
AGGAGAU
SELEX
Cook et al.(2011)
949_10094314
0.856
SNRPA
M347_0.6
Homo sapiens
GAGCAGUAGKS
SELEX
Cook et al.(2011)
948_10094314
0.856
SNRPA
M346_0.6
Homo sapiens
GGGUAUGCUG
SELEX
Cook et al.(2011)
947_10094314
0.856
SNRPA
M345_0.6
Homo sapiens
GWUWCCUGCUA
SELEX
Cook et al.(2011)
946_10094314
0.856
SNRPA
M319_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
663_1717938
0.856
SNRPA
M318_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
662_1717938
0.856
SNRPA
M317_0.6
Homo sapiens
AUUGCAC
SELEX
Cook et al.(2011)
661_1717938
0.856
SNRPA
M069_0.6
Homo sapiens
WUGCACR
RNAcompete
Ray et al.(2013)
RNCMPT00071
0.856
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
amel4_ncbi_hmm2739
RRM
9
80
IYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVXFKEIASATNALRSMQGFPXYDKPMR
amel4_ncbi_hmm2739
RRM
159
225
LFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMK
Links
Other
RRM
family RBPs
Other
Apis mellifera
RBPs
125 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
nasonia_NCBI_hmm682213
Nasonia vitripennis
nasonia_NCBI_hmm682213
I
0.986
BGIBMGA012118
Bombyx mori
BGIBMGA012118
I
0.914
e_gw1.38.145.1
Lottia gigantea
e_gw1.38.145.1
I
0.906
GF21334
Drosophila ananassae
FBgn0098336
I
0.892
GH24608
Drosophila grimshawi
FBgn0132064
I
0.892
GL14287
Drosophila persimilis
FBgn0151892
I
0.892
snf
Drosophila mojavensis
FBgn0069598
I
0.892
GA18235-RA
Drosophila pseudoobscura
FBgn0078242
I
0.892
GJ16850
Drosophila virilis
FBgn0204029
I
0.892
GK25839
Drosophila willistoni
FBgn0227798
I
0.892
AAEL002980
Aedes aegypti
AAEL002980
I
0.892
AAEL014167
Aedes aegypti
AAEL014167
I
0.892
snf
Drosophila melanogaster
FBgn0003449
D
0.885
GE16390
Drosophila yakuba
FBgn0233919
I
0.885
GM12396
Drosophila sechellia
FBgn0167333
I
0.885
GG18748
Drosophila erecta
FBgn0110957
I
0.885
estExt_Genewise1Plus.C_1950032
Capitella teleta
estExt_Genewise1Plus.C_1950032
I
0.885
estExt_fgenesh2_pg.C_1420076
Branchiostoma floridae
estExt_fgenesh2_pg.C_1420076
I
0.878
estExt_fgenesh2_pg.C_3980007
Branchiostoma floridae
estExt_fgenesh2_pg.C_3980007
I
0.878
CpipJ_CPIJ019134
Culex pipiens
CpipJ_CPIJ019134
I
0.871
AGAP011637
Anopheles gambiae
AGAP011637
I
0.871
CPIJ019134
Culex quinquefasciatus
CPIJ019134
I
0.871
SNRPA
Monodelphis domestica
ENSMODG00000007912
I
0.863
SNRPA
Procavia capensis
ENSPCAG00000012325
I
0.863
SNRPA
Macaca mulatta
ENSMMUG00000022024
I
0.856
e_gw.11.168.1
Nematostella vectensis
e_gw.11.168.1
I
0.856
ENSPPYG00000010002
Pongo pygmaeus
ENSPPYG00000010002
I
0.856
Snrpa
Rattus norvegicus
ENSRNOG00000001501
I
0.856
SNRPA
Sus scrofa
ENSSSCG00000002998
I
0.856
SNRPA
Tupaia belangeri
ENSTBEG00000012717
I
0.856
SNRPA
Pteropus vampyrus
ENSPVAG00000001494
I
0.856
SNRPA
Pan troglodytes
ENSPTRG00000011007
I
0.856
SNRPA
Ochotona princeps
ENSOPRG00000002364
I
0.856
DGIL_AUG5s14106g2t1
Acyrtosiphon pisum
DGIL_AUG5s14106g2t1
I
0.856
SNRPA
Otolemur garnettii
ENSOGAG00000002864
I
0.856
SNRPA
Myotis lucifugus
ENSMLUG00000000219
I
0.856
LOC100068274
Equus caballus
ENSECAG00000013141
I
0.856
SNRPA
Erinaceus europaeus
ENSEEUG00000015149
I
0.856
SNRPA
Felis catus
ENSFCAG00000016209
I
0.856
ENSDORG00000006711
Dipodomys ordii
ENSDORG00000006711
I
0.856
Ame_R012098
Ailuropoda melanoleuca
Ame_R012098
I
0.856
SNRPA_BOVIN
Bos taurus
ENSBTAG00000009077
I
0.856
SNRPA
Canis familiaris
ENSCAFG00000005091
I
0.856
snrpa
Danio rerio
ENSDARG00000018890
I
0.856
SNRPA
Homo sapiens
ENSG00000077312
D
0.856
SNRPA
Cavia porcellus
ENSCPOG00000010875
I
0.856
SPA_estExt_Genewise1Plus.C_890021
Daphnia pulex
SPA_estExt_Genewise1Plus.C_890021
I
0.856
SNRPA
Gorilla gorilla
ENSGGOG00000001190
I
0.856
SNRPA
Oryzias latipes
ENSORLG00000006536
I
0.849
Snrpa
Mus musculus
ENSMUSG00000061479
I
0.849
SNRPA
Tursiops truncatus
ENSTTRG00000007182
I
0.849
SNRPA
Takifugu rubripes
ENSTRUG00000009703
I
0.849
AAH44979
Xenopus laevis
AAH44979
I
0.842
CAA41021
Xenopus laevis
CAA41021
I
0.842
SNRPA
Anolis carolinensis
ENSACAG00000013557
I
0.842
LOC100410790
Callithrix jacchus
ENSCJAG00000021962
I
0.842
P45429
Xenopus laevis
P45429
I
0.842
ENSCING00000009501
Ciona intestinalis
ENSCING00000009501
I
0.835
SNRPB2
Taeniopygia guttata
ENSTGUG00000002415
I
0.827
SNRPB2
Gallus gallus
ENSGALG00000008729
I
0.827
SNRPA
Gasterosteus aculeatus
ENSGACG00000009838
I
0.827
SNRPB2
Meleagris gallopavo
ENSMGAG00000006135
I
0.827
SNRPB2
Tursiops truncatus
ENSTTRG00000006395
I
0.820
SNRPB2
Vicugna pacos
ENSVPAG00000004557
I
0.820
SNRPB2
Sus scrofa
ENSSSCG00000007081
I
0.820
LOC477148
Canis familiaris
ENSCAFG00000005520
I
0.820
SNRPB2
Spermophilus tridecemlineatus
ENSSTOG00000009198
I
0.820
SNRPB2
Tupaia belangeri
ENSTBEG00000012892
I
0.820
Q3T0M6_BOVIN
Bos taurus
ENSBTAG00000027506
I
0.820
SNRPB2
Loxodonta africana
ENSLAFG00000008775
I
0.820
SNRPA
Tetraodon nigroviridis
ENSTNIG00000007732
I
0.820
SNRPB2
Tarsius syrichta
ENSTSYG00000008857
I
0.820
SNRPB2
Pan troglodytes
ENSPTRG00000013271
I
0.820
LOC100050830
Equus caballus
ENSECAG00000018407
I
0.820
SNRPB2
Ornithorhynchus anatinus
ENSOANG00000001237
I
0.820
SNRPB2
Otolemur garnettii
ENSOGAG00000015146
I
0.820
Snrpb2
Mus musculus
ENSMUSG00000008333
I
0.820
SNRPB2
Microcebus murinus
ENSMICG00000015404
I
0.820
SNRPB2
Homo sapiens
ENSG00000125870
I
0.820
SNRPA
Echinops telfairi
ENSETEG00000019205
I
0.820
SNRPB2
Ochotona princeps
ENSOPRG00000011587
I
0.820
Ame_R017767
Ailuropoda melanoleuca
Ame_R017767
I
0.820
LOC100408625
Callithrix jacchus
ENSCJAG00000004811
I
0.820
Snrpb2
Rattus norvegicus
ENSRNOG00000004967
I
0.820
SNRPB2
Macaca mulatta
ENSMMUG00000014493
I
0.820
ENSPPYG00000010723
Pongo pygmaeus
ENSPPYG00000010723
I
0.820
SNRPB2
Gorilla gorilla
ENSGGOG00000003937
I
0.820
SNRPB2
Cavia porcellus
ENSCPOG00000005014
I
0.820
SNRPB2
Sorex araneus
ENSSARG00000002681
I
0.820
SNRPB2
Procavia capensis
ENSPCAG00000003156
I
0.813
snrpb2
Xenopus tropicalis
ENSXETG00000003550
I
0.813
SNRPB2
Myotis lucifugus
ENSMLUG00000008163
I
0.813
SNRPA
Oryctolagus cuniculus
ENSOCUG00000024618
I
0.813
SNRPB2
Oryctolagus cuniculus
ENSOCUG00000001427
I
0.813
SNRPB2
Anolis carolinensis
ENSACAG00000000582
I
0.813
AAH72799
Xenopus laevis
AAH72799
I
0.806
SNRPB2
Monodelphis domestica
ENSMODG00000005392
I
0.799
SNRPB2
Pteropus vampyrus
ENSPVAG00000016140
I
0.784
ENSCSAVG00000000396
Ciona savignyi
ENSCSAVG00000000396
I
0.784
LOC100407601
Callithrix jacchus
ENSCJAG00000023308
I
0.777
AAH84107
Xenopus laevis
AAH84107
I
0.777
e_gw1.1.761.1
Trichoplax adhaerens
e_gw1.1.761.1
I
0.770
snrpb2
Danio rerio
ENSDARG00000039424
I
0.770
Aqu1.229782
Amphimedon queenslandica
Aqu1.229782
I
0.770
SNRPB2
Gasterosteus aculeatus
ENSGACG00000019682
I
0.770
SNRPA
Loxodonta africana
ENSLAFG00000026568
I
0.763
SNRPB2
Echinops telfairi
ENSETEG00000001085
I
0.763
105398
Helobdella robusta
105398
I
0.763
SNRPB2
Takifugu rubripes
ENSTRUG00000009060
I
0.763
SNRPB2
Tetraodon nigroviridis
ENSTNIG00000002735
I
0.763
SNRPB2
Oryzias latipes
ENSORLG00000019421
I
0.763
ENSCJAG00000014865
Callithrix jacchus
ENSCJAG00000014865
I
0.763
SNRPA
Macropus eugenii
ENSMEUG00000002434
I
0.748
LOC100394904
Callithrix jacchus
ENSCJAG00000022477
I
0.741
SNRPB2
Macropus eugenii
ENSMEUG00000016552
I
0.734
XP_001202981.1
Strongylocentrotus purpuratus
XP_001202981.1
I
0.734
XP_789234.2
Strongylocentrotus purpuratus
XP_789234.2
I
0.734
SNRPA
Microcebus murinus
ENSMICG00000009766
I
0.727
LOAG_02293
Loa loa
LOAG_02293
I
0.719
WUBG_10715
Wuchereria bancrofti
WUBG_10715
I
0.719
Bm1_37765
Brugia malayi
Bm1_37765
I
0.719
ENSTGUG00000016203
Taeniopygia guttata
ENSTGUG00000016203
I
0.712
186191
Helobdella robusta
186191
I
0.712
Gm5145
Mus musculus
ENSMUSG00000071273
I
0.712
Smp_069870
Schistosoma mansoni
Smp_069870
I
0.707