SNRPA (Erinaceus europaeus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSEEUG00000015149 T36851_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SNRPA
M348_0.6 		Homo sapiens AGGAGAU SELEX
Cook et al.(2011)
949_10094314 		0.986
SNRPA
M347_0.6 		Homo sapiens GAGCAGUAGKS SELEX
Cook et al.(2011)
948_10094314 		0.986
SNRPA
M346_0.6 		Homo sapiens GGGUAUGCUG SELEX
Cook et al.(2011)
947_10094314 		0.986
SNRPA
M345_0.6 		Homo sapiens GWUWCCUGCUA SELEX
Cook et al.(2011)
946_10094314 		0.986
SNRPA
M319_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
663_1717938 		0.986
SNRPA
M318_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
662_1717938 		0.986
SNRPA
M317_0.6 		Homo sapiens AUUGCAC SELEX
Cook et al.(2011)
661_1717938 		0.986
SNRPA
M069_0.6 		Homo sapiens WUGCACR RNAcompete
Ray et al.(2013)
RNCMPT00071 		0.986
snf
M136_0.6 		Drosophila melanogaster UWGCAC RNAcompete
Ray et al.(2013)
RNCMPT00145 		0.826
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000013817 RRM 12 83
ENSEEUP00000013817 RRM 210 275

Links

Other RRM family RBPs
Other Erinaceus europaeus RBPs

121 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SNRPA Ochotona princeps ENSOPRG00000002364 I 0.986
Ame_R012098 Ailuropoda melanoleuca Ame_R012098 I 0.986
SNRPA Macaca mulatta ENSMMUG00000022024 I 0.986
SNRPA_BOVIN Bos taurus ENSBTAG00000009077 I 0.986
SNRPA Myotis lucifugus ENSMLUG00000000219 I 0.986
ENSPPYG00000010002 Pongo pygmaeus ENSPPYG00000010002 I 0.986
SNRPA Pan troglodytes ENSPTRG00000011007 I 0.986
SNRPA Tupaia belangeri ENSTBEG00000012717 I 0.986
SNRPA Sus scrofa ENSSSCG00000002998 I 0.986
Snrpa Rattus norvegicus ENSRNOG00000001501 I 0.986
SNRPA Pteropus vampyrus ENSPVAG00000001494 I 0.986
SNRPA Canis familiaris ENSCAFG00000005091 I 0.986
SNRPA Otolemur garnettii ENSOGAG00000002864 I 0.986
SNRPA Gorilla gorilla ENSGGOG00000001190 I 0.986
SNRPA Cavia porcellus ENSCPOG00000010875 I 0.986
ENSDORG00000006711 Dipodomys ordii ENSDORG00000006711 I 0.986
LOC100068274 Equus caballus ENSECAG00000013141 I 0.986
SNRPA Felis catus ENSFCAG00000016209 I 0.986
SNRPA Homo sapiens ENSG00000077312 D 0.986
SNRPA Monodelphis domestica ENSMODG00000007912 I 0.978
SNRPA Procavia capensis ENSPCAG00000012325 I 0.978
SNRPA Tursiops truncatus ENSTTRG00000007182 I 0.971
SNRPA Anolis carolinensis ENSACAG00000013557 I 0.964
LOC100410790 Callithrix jacchus ENSCJAG00000021962 I 0.964
Snrpa Mus musculus ENSMUSG00000061479 I 0.964
P45429 Xenopus laevis P45429 I 0.942
CAA41021 Xenopus laevis CAA41021 I 0.942
AAH44979 Xenopus laevis AAH44979 I 0.942
SNRPA Oryctolagus cuniculus ENSOCUG00000024618 I 0.935
SNRPA Takifugu rubripes ENSTRUG00000009703 I 0.935
snrpa Danio rerio ENSDARG00000018890 I 0.935
SNRPA Tetraodon nigroviridis ENSTNIG00000007732 I 0.928
SNRPA Echinops telfairi ENSETEG00000019205 I 0.928
SNRPA Gasterosteus aculeatus ENSGACG00000009838 I 0.928
SNRPA Oryzias latipes ENSORLG00000006536 I 0.913
ENSCJAG00000014865 Callithrix jacchus ENSCJAG00000014865 I 0.891
nasonia_NCBI_hmm682213 Nasonia vitripennis nasonia_NCBI_hmm682213 I 0.871
SNRPA Macropus eugenii ENSMEUG00000002434 I 0.870
e_gw1.38.145.1 Lottia gigantea e_gw1.38.145.1 I 0.870
estExt_Genewise1Plus.C_1950032 Capitella teleta estExt_Genewise1Plus.C_1950032 I 0.862
SNRPA Loxodonta africana ENSLAFG00000026568 I 0.862
amel4_ncbi_hmm2739 Apis mellifera amel4_ncbi_hmm2739 I 0.856
estExt_fgenesh2_pg.C_1420076 Branchiostoma floridae estExt_fgenesh2_pg.C_1420076 I 0.848
BGIBMGA012118 Bombyx mori BGIBMGA012118 I 0.848
estExt_fgenesh2_pg.C_3980007 Branchiostoma floridae estExt_fgenesh2_pg.C_3980007 I 0.848
SNRPA Microcebus murinus ENSMICG00000009766 I 0.841
AAEL002980 Aedes aegypti AAEL002980 I 0.833
AGAP011637 Anopheles gambiae AGAP011637 I 0.833
AAEL014167 Aedes aegypti AAEL014167 I 0.833
GM12396 Drosophila sechellia FBgn0167333 I 0.826
GG18748 Drosophila erecta FBgn0110957 I 0.826
GH24608 Drosophila grimshawi FBgn0132064 I 0.826
SPA_estExt_Genewise1Plus.C_890021 Daphnia pulex SPA_estExt_Genewise1Plus.C_890021 I 0.826
snf Drosophila mojavensis FBgn0069598 I 0.826
e_gw.11.168.1 Nematostella vectensis e_gw.11.168.1 I 0.826
GE16390 Drosophila yakuba FBgn0233919 I 0.826
GK25839 Drosophila willistoni FBgn0227798 I 0.826
GJ16850 Drosophila virilis FBgn0204029 I 0.826
snf Drosophila melanogaster FBgn0003449 D 0.826
Gm5145 Mus musculus ENSMUSG00000071273 I 0.826
CPIJ019134 Culex quinquefasciatus CPIJ019134 I 0.819
GF21334 Drosophila ananassae FBgn0098336 I 0.819
GA18235-RA Drosophila pseudoobscura FBgn0078242 I 0.819
GL14287 Drosophila persimilis FBgn0151892 I 0.819
CpipJ_CPIJ019134 Culex pipiens CpipJ_CPIJ019134 I 0.819
ENSCING00000009501 Ciona intestinalis ENSCING00000009501 I 0.812
SNRPB2 Meleagris gallopavo ENSMGAG00000006135 I 0.784
SNRPB2 Procavia capensis ENSPCAG00000003156 I 0.784
SNRPB2 Taeniopygia guttata ENSTGUG00000002415 I 0.784
SNRPB2 Gallus gallus ENSGALG00000008729 I 0.784
AAH84107 Xenopus laevis AAH84107 I 0.783
DGIL_AUG5s14106g2t1 Acyrtosiphon pisum DGIL_AUG5s14106g2t1 I 0.783
SNRPB2 Ornithorhynchus anatinus ENSOANG00000001237 I 0.777
LOC100050830 Equus caballus ENSECAG00000018407 I 0.777
SNRPB2 Ochotona princeps ENSOPRG00000011587 I 0.777
snrpb2 Xenopus tropicalis ENSXETG00000003550 I 0.777
SNRPB2 Homo sapiens ENSG00000125870 I 0.777
SNRPB2 Oryctolagus cuniculus ENSOCUG00000001427 I 0.777
SNRPB2 Macaca mulatta ENSMMUG00000014493 I 0.777
LOC100408625 Callithrix jacchus ENSCJAG00000004811 I 0.777
SNRPB2 Loxodonta africana ENSLAFG00000008775 I 0.777
SNRPB2 Cavia porcellus ENSCPOG00000005014 I 0.777
LOC477148 Canis familiaris ENSCAFG00000005520 I 0.777
SNRPB2 Microcebus murinus ENSMICG00000015404 I 0.777
SNRPB2 Gorilla gorilla ENSGGOG00000003937 I 0.777
Q3T0M6_BOVIN Bos taurus ENSBTAG00000027506 I 0.777
Snrpb2 Mus musculus ENSMUSG00000008333 I 0.777
SNRPB2 Otolemur garnettii ENSOGAG00000015146 I 0.777
SNRPB2 Spermophilus tridecemlineatus ENSSTOG00000009198 I 0.777
SNRPB2 Pan troglodytes ENSPTRG00000013271 I 0.777
Snrpb2 Rattus norvegicus ENSRNOG00000004967 I 0.777
SNRPB2 Sorex araneus ENSSARG00000002681 I 0.777
SNRPB2 Sus scrofa ENSSSCG00000007081 I 0.777
Ame_R017767 Ailuropoda melanoleuca Ame_R017767 I 0.777
ENSPPYG00000010723 Pongo pygmaeus ENSPPYG00000010723 I 0.777
SNRPB2 Vicugna pacos ENSVPAG00000004557 I 0.777
SNRPB2 Tursiops truncatus ENSTTRG00000006395 I 0.777
SNRPB2 Tarsius syrichta ENSTSYG00000008857 I 0.777
SNRPB2 Tupaia belangeri ENSTBEG00000012892 I 0.777
SNRPB2 Anolis carolinensis ENSACAG00000000582 I 0.770
SNRPB2 Myotis lucifugus ENSMLUG00000008163 I 0.770
AAH72799 Xenopus laevis AAH72799 I 0.770
ENSCSAVG00000000396 Ciona savignyi ENSCSAVG00000000396 I 0.768
e_gw1.1.761.1 Trichoplax adhaerens e_gw1.1.761.1 I 0.768
LOC100407601 Callithrix jacchus ENSCJAG00000023308 I 0.761
SNRPB2 Monodelphis domestica ENSMODG00000005392 I 0.755
snrpb2 Danio rerio ENSDARG00000039424 I 0.754
SNRPB2 Pteropus vampyrus ENSPVAG00000016140 I 0.748
SNRPB2 Tetraodon nigroviridis ENSTNIG00000002735 I 0.746
SNRPB2 Takifugu rubripes ENSTRUG00000009060 I 0.746
105398 Helobdella robusta 105398 I 0.746
SNRPB2 Gasterosteus aculeatus ENSGACG00000019682 I 0.739
SNRPB2 Echinops telfairi ENSETEG00000001085 I 0.732
LOC100394904 Callithrix jacchus ENSCJAG00000022477 I 0.732
SNRPB2 Oryzias latipes ENSORLG00000019421 I 0.725
186191 Helobdella robusta 186191 I 0.710
Aqu1.229782 Amphimedon queenslandica Aqu1.229782 I 0.705
LOAG_02293 Loa loa LOAG_02293 I 0.703
WUBG_10715 Wuchereria bancrofti WUBG_10715 I 0.703
Bm1_37765 Brugia malayi Bm1_37765 I 0.703
Smp_069870 Schistosoma mansoni Smp_069870 I 0.700