CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZRSR2
(
Oryzias latipes
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSORLG00000003476
T00587_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000004323
CCCH ZF
171
194
RDVANCPFFLKTGACRFGERCRCS
ENSORLP00000004323
RRM
246
304
YHDVLPEFKSVGKVVQFKVCCNYEPHLKGNVYIQFETDDQCKEALMKFNGRWYAGRQLQ
ENSORLP00000004323
CCCH ZF
313
338
WKNAICGLFDRRKCPKGKHCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Oryzias latipes
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZRSR2
Gasterosteus aculeatus
ENSGACG00000015069
N
0.848
Q9W6Q9_FUGRU
Takifugu rubripes
ENSTRUG00000017089
N
0.812
ZRSR2
Tetraodon nigroviridis
ENSTNIG00000009495
N
0.795
zrsr2
Danio rerio
ENSDARG00000058448
N
0.768
ENSACAG00000017034
Anolis carolinensis
ENSACAG00000017034
N
0.732
ENSOCUG00000004295
Oryctolagus cuniculus
ENSOCUG00000004295
N
0.705
ENSOANG00000002571
Ornithorhynchus anatinus
ENSOANG00000002571
N
0.705
ZRSR2
Gallus gallus
ENSGALG00000016552
N
0.705
ENSMGAG00000014689
Meleagris gallopavo
ENSMGAG00000014689
N
0.705