CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q9W6Q9_FUGRU
(
Takifugu rubripes
)
CCCH ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1)
IPR000571
IPR000504
ENSTRUG00000017089
T00641_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000043777
CCCH ZF
170
195
DVSNCPFFLKTGSCRFGDRCSRKHVY
ENSTRUP00000043777
RRM
242
300
YHDVLPEFKSVGKVLQFKVSCNHEPHLRGNVYVQFETEEQCKEAFIKFNGRWYAGRQLH
ENSTRUP00000043777
CCCH ZF
309
334
WKNAICGLFDRQKCPKGKHCNFLHVF
ENSTRUP00000043778
CCCH ZF
176
201
DVSNCPFFLKTGSCRFGDRCSRKHVY
ENSTRUP00000043778
RRM
248
306
YHDVLPEFKSVGKVLQFKVSCNHEPHLRGNVYVQFETEEQCKEAFIKFNGRWYAGRQLH
ENSTRUP00000043778
CCCH ZF
315
340
WKNAICGLFDRQKCPKGKHCNFLHVF
ENSTRUP00000043779
CCCH ZF
169
194
DVSNCPFFLKTGSCRFGDRCSRKHVY
ENSTRUP00000043779
RRM
241
299
YHDVLPEFKSVGKVLQFKVSCNHEPHLRGNVYVQFETEEQCKEAFIKFNGRWYAGRQLH
ENSTRUP00000043779
CCCH ZF
308
333
WKNAICGLFDRQKCPKGKHCNFLHVF
ENSTRUP00000043780
CCCH ZF
175
200
DVSNCPFFLKTGSCRFGDRCSRKHVY
ENSTRUP00000043780
RRM
247
305
YHDVLPEFKSVGKVLQFKVSCNHEPHLRGNVYVQFETEEQCKEAFIKFNGRWYAGRQLH
ENSTRUP00000043780
CCCH ZF
314
339
WKNAICGLFDRQKCPKGKHCNFLHVF
ENSTRUP00000043781
CCCH ZF
173
198
DVSNCPFFLKTGSCRFGDRCSRKHVY
ENSTRUP00000043781
RRM
245
303
YHDVLPEFKSVGKVLQFKVSCNHEPHLRGNVYVQFETEEQCKEAFIKFNGRWYAGRQLH
ENSTRUP00000043781
CCCH ZF
312
337
WKNAICGLFDRQKCPKGKHCNFLHVF
Links
Other
CCCH ZF,RRM
family RBPs
Other
Takifugu rubripes
RBPs
41 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ZRSR2
Tetraodon nigroviridis
ENSTNIG00000009495
N
0.964
ZRSR2
Gasterosteus aculeatus
ENSGACG00000015069
N
0.920
zrsr2
Danio rerio
ENSDARG00000058448
N
0.821
ENSOANG00000002571
Ornithorhynchus anatinus
ENSOANG00000002571
N
0.812
ZRSR2
Oryzias latipes
ENSORLG00000003476
N
0.812
XM_001380899.1
Monodelphis domestica
ENSMODG00000017202
N
0.804
ENSMGAG00000014689
Meleagris gallopavo
ENSMGAG00000014689
N
0.786
ZRSR2
Gallus gallus
ENSGALG00000016552
N
0.786
ENSACAG00000017034
Anolis carolinensis
ENSACAG00000017034
N
0.786
ENSEEUG00000002115
Erinaceus europaeus
ENSEEUG00000002115
N
0.777
ZRSR2
Taeniopygia guttata
ENSTGUG00000007964
N
0.777
Zrsr2
Mus musculus
ENSMUSG00000031370
N
0.768
Zrsr2
Rattus norvegicus
ENSRNOG00000033176
N
0.768
ENSMLUG00000009780
Myotis lucifugus
ENSMLUG00000009780
N
0.759
ZRSR2
Pan troglodytes
ENSPTRG00000021693
N
0.759
ZRSR2
Macaca mulatta
ENSMMUG00000014054
N
0.759
Zrsr1
Mus musculus
ENSMUSG00000044068
N
0.759
Ame_R018576
Ailuropoda melanoleuca
Ame_R018576
N
0.759
ZRSR1
Pan troglodytes
ENSPTRG00000017138
N
0.759
ENSMICG00000003211
Microcebus murinus
ENSMICG00000003211
N
0.759
ENSOCUG00000004295
Oryctolagus cuniculus
ENSOCUG00000004295
N
0.759
ENSPPYG00000020150
Pongo pygmaeus
ENSPPYG00000020150
N
0.759
Zrsr1
Rattus norvegicus
ENSRNOG00000009639
N
0.759
ZRSR1
Homo sapiens
ENSG00000212643
N
0.759
ZRSR2
Homo sapiens
ENSG00000169249
N
0.759
LOC100056195
Equus caballus
ENSECAG00000006454
N
0.759
ENSBTAG00000020419
Bos taurus
ENSBTAG00000020419
N
0.759
ENSVPAG00000007641
Vicugna pacos
ENSVPAG00000007641
N
0.759
ENSCPOG00000004227
Cavia porcellus
ENSCPOG00000004227
N
0.759
ENSTSYG00000005278
Tarsius syrichta
ENSTSYG00000005278
N
0.759
ENSGGOG00000011962
Gorilla gorilla
ENSGGOG00000011962
N
0.759
XM_548872.2
Canis familiaris
ENSCAFG00000012201
N
0.750
ENSPVAG00000010216
Pteropus vampyrus
ENSPVAG00000010216
N
0.750
ENSCJAG00000020956
Callithrix jacchus
ENSCJAG00000020956
N
0.750
ENSLAFG00000009326
Loxodonta africana
ENSLAFG00000009326
N
0.732
ENSLAFG00000018654
Loxodonta africana
ENSLAFG00000018654
N
0.723
ENSETEG00000005141
Echinops telfairi
ENSETEG00000005141
N
0.721
estExt_fgenesh2_pg.C_300183
Branchiostoma floridae
estExt_fgenesh2_pg.C_300183
N
0.712
estExt_fgenesh2_pg.C_1250066
Branchiostoma floridae
estExt_fgenesh2_pg.C_1250066
N
0.712
ENSTBEG00000008533
Tupaia belangeri
ENSTBEG00000008533
N
0.705