fgenesh1_pm.C_Chr_15000025 (Ostreococcus lucimarinus)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		fgenesh1_pm.C_Chr_15000025 T00939_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_Chr_15000025 CCCH ZF 13 39
fgenesh1_pm.C_Chr_15000025 RRM 81 142
fgenesh1_pm.C_Chr_15000025 CCCH ZF 151 176

Links

Other CCCH ZF,RRM family RBPs
Other Ostreococcus lucimarinus RBPs

59 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
1600010121 Ostreococcus tauri 1600010121 N 0.888
e_gw1.11.331.1 Ostreococcus RCC809 e_gw1.11.331.1 N 0.888
Chlre2_kg.scaffold_3000449 Chlamydomonas reinhardtii Chlre2_kg.scaffold_3000449 N 0.765
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.765
estExt_Genewise1Plus.C_470052 Volvox carteri estExt_Genewise1Plus.C_470052 N 0.765
BGIOSIBCE030417 Oryza indica BGIOSIBCE030417 N 0.757
LOC_Os09g31482 Oryza sativa LOC_Os09g31482 N 0.757
LjB15A13.120.nd Lotus japonicus LjB15A13.120.nd N 0.757
fgenesh1_pm.C_scaffold_1000024 Selaginella moellendorfii fgenesh1_pm.C_scaffold_1000024 N 0.748
Sb02g028540 Sorghum bicolor Sb02g028540 N 0.748
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.748
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.748
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.748
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.748
B9MYK3_POPTR Populus trichocarpa POPTR_0004s20030 N 0.746
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.739
GRMZM2G177229 Zea mays GRMZM2G177229 N 0.739
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.739
cassava23933.valid.m1 Manihot esculenta cassava23933.valid.m1 N 0.739
cassava13474.valid.m1 Manihot esculenta cassava13474.valid.m1 N 0.739
XM_002863687.1 Arabidopsis lyrata fgenesh2_kg.8__553__AT5G42820.1 N 0.730
cassava12246.valid.m1 Manihot esculenta cassava12246.valid.m1 N 0.730
POPTR_0006s11790 Populus trichocarpa POPTR_0006s11790 N 0.730
cassava12245.valid.m1 Manihot esculenta cassava12245.valid.m1 N 0.730
SB09G028530 Sorghum bicolor Sb09g028530 N 0.730
SB03G030670 Sorghum bicolor Sb03g030670 N 0.730
B9H5X4_POPTR Populus trichocarpa POPTR_0005s27940 N 0.730
XM_002877317.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000707 N 0.730
GRMZM2G031827 Zea mays GRMZM2G031827 N 0.730
MDP0000321343 Malus x domestica MDP0000321343 N 0.730
PDK_20s1490591g003 Phoenix dactylifera PDK_20s1490591g003 N 0.730
GRMZM2G025014 Zea mays GRMZM2G025014 N 0.730
GRMZM2G020928 Zea mays GRMZM2G020928 N 0.730
mgf001805m Mimulus guttatus mgf001805m N 0.730
mgf010816m Mimulus guttatus mgf010816m N 0.730
ppa008459m Prunus persica ppa008459m N 0.730
MDP0000179037 Malus x domestica MDP0000179037 N 0.730
ppa025949m Prunus persica ppa025949m N 0.730
U2AF35B Arabidopsis thaliana AT5G42820-TAIR-G N 0.730
BGIOSIBCE020024 Oryza indica BGIOSIBCE020024 N 0.722
Cucsa.272480 Cucumis sativus Cucsa.272480 N 0.722
Cucsa.083100 Cucumis sativus Cucsa.083100 N 0.722
LOC_Os05g48960 Oryza sativa LOC_Os05g48960 N 0.722
BRADI2G16520 Brachypodium distachyon BRADI2G16520 N 0.722
ATU2AF35A Arabidopsis thaliana AT1G27650-TAIR-G N 0.722
MDP0000284705 Malus x domestica MDP0000284705 N 0.722
XM_002890695.1 Arabidopsis lyrata fgenesh2_kg.1__2923__AT1G27650.1 N 0.722
30170.m013808 Ricinus communis 30170.m013808 N 0.722
Glyma03g34840.1 Glycine max Glyma03g34840.1 N 0.713
Glyma19g37530.1 Glycine max Glyma19g37530.1 N 0.713
cassava30765.valid.m1 Manihot esculenta cassava30765.valid.m1 N 0.713
29092.m000448 Ricinus communis 29092.m000448 N 0.713
MDP0000640144 Malus x domestica MDP0000640144 N 0.713
cassava34088.m1 Manihot esculenta cassava34088.m1 N 0.713
BRADI2G46080 Brachypodium distachyon BRADI2G46080 N 0.713
cassava30766.valid.m1 Manihot esculenta cassava30766.valid.m1 N 0.713
Glyma07g20090.1 Glycine max Glyma07g20090.1 N 0.704
Cucsa.200060 Cucumis sativus Cucsa.200060 N 0.702
estExt_fgenesh3_pg.C_90081 Chlorella NC64A estExt_fgenesh3_pg.C_90081 N 0.700