XM_002863687.1 (Arabidopsis lyrata)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		fgenesh2_kg.8__553__AT5G42820.1 T00713_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.8__553__AT5G42820.1 CCCH ZF 13 39
fgenesh2_kg.8__553__AT5G42820.1 RRM 82 140
fgenesh2_kg.8__553__AT5G42820.1 CCCH ZF 149 174

Links

Other CCCH ZF,RRM family RBPs
Other Arabidopsis lyrata RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
U2AF35B Arabidopsis thaliana AT5G42820-TAIR-G N 1.000
MDP0000321343 Malus x domestica MDP0000321343 N 0.946
B9H5X4_POPTR Populus trichocarpa POPTR_0005s27940 N 0.938
30170.m013808 Ricinus communis 30170.m013808 N 0.938
cassava23933.valid.m1 Manihot esculenta cassava23933.valid.m1 N 0.938
mgf001805m Mimulus guttatus mgf001805m N 0.938
Cucsa.272480 Cucumis sativus Cucsa.272480 N 0.938
ATU2AF35A Arabidopsis thaliana AT1G27650-TAIR-G N 0.929
XM_002890695.1 Arabidopsis lyrata fgenesh2_kg.1__2923__AT1G27650.1 N 0.929
SB03G030670 Sorghum bicolor Sb03g030670 N 0.911
GRMZM2G031827 Zea mays GRMZM2G031827 N 0.902
GRMZM2G025014 Zea mays GRMZM2G025014 N 0.902
GRMZM2G020928 Zea mays GRMZM2G020928 N 0.902
BRADI2G16520 Brachypodium distachyon BRADI2G16520 N 0.902
SB09G028530 Sorghum bicolor Sb09g028530 N 0.902
PDK_20s1490591g003 Phoenix dactylifera PDK_20s1490591g003 N 0.902
BGIOSIBCE020024 Oryza indica BGIOSIBCE020024 N 0.902
LOC_Os05g48960 Oryza sativa LOC_Os05g48960 N 0.902
LOC_Os09g31482 Oryza sativa LOC_Os09g31482 N 0.893
BGIOSIBCE030417 Oryza indica BGIOSIBCE030417 N 0.893
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.884
Glyma07g20090.1 Glycine max Glyma07g20090.1 N 0.884
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.884
Sb02g028540 Sorghum bicolor Sb02g028540 N 0.884
BRADI2G46080 Brachypodium distachyon BRADI2G46080 N 0.875
BRADI4G33870 Brachypodium distachyon BRADI4G33870 N 0.875
GRMZM2G177229 Zea mays GRMZM2G177229 N 0.875
B9GPM3_POPTR Populus trichocarpa POPTR_0002s00480 N 0.871
fgenesh1_pm.C_scaffold_1000024 Selaginella moellendorfii fgenesh1_pm.C_scaffold_1000024 N 0.857
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.839
cassava13474.valid.m1 Manihot esculenta cassava13474.valid.m1 N 0.839
mgf010816m Mimulus guttatus mgf010816m N 0.839
MDP0000179037 Malus x domestica MDP0000179037 N 0.839
Glyma19g37530.1 Glycine max Glyma19g37530.1 N 0.839
ppa008459m Prunus persica ppa008459m N 0.839
Glyma03g34840.1 Glycine max Glyma03g34840.1 N 0.839
29092.m000448 Ricinus communis 29092.m000448 N 0.830
cassava30766.valid.m1 Manihot esculenta cassava30766.valid.m1 N 0.830
ppa025949m Prunus persica ppa025949m N 0.830
estExt_Genewise1Plus.C_470052 Volvox carteri estExt_Genewise1Plus.C_470052 N 0.830
MDP0000640144 Malus x domestica MDP0000640144 N 0.830
chr1.CM0378.200.nd Lotus japonicus chr1.CM0378.200.nd N 0.830
POPTR_0006s11790 Populus trichocarpa POPTR_0006s11790 N 0.830
cassava30765.valid.m1 Manihot esculenta cassava30765.valid.m1 N 0.830
cassava34088.m1 Manihot esculenta cassava34088.m1 N 0.830
Chlre2_kg.scaffold_3000449 Chlamydomonas reinhardtii Chlre2_kg.scaffold_3000449 N 0.830
Medtr1g039850 Medicago truncatula Medtr1g039850 N 0.824
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.821
LjB15A13.120.nd Lotus japonicus LjB15A13.120.nd N 0.821
MDP0000284705 Malus x domestica MDP0000284705 N 0.821
cassava12246.valid.m1 Manihot esculenta cassava12246.valid.m1 N 0.821
cassava12245.valid.m1 Manihot esculenta cassava12245.valid.m1 N 0.821
Cucsa.083100 Cucumis sativus Cucsa.083100 N 0.821
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.812
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.812
GRMZM2G162119 Zea mays GRMZM2G162119 N 0.812
XM_002877317.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000707 N 0.804
B9MYK3_POPTR Populus trichocarpa POPTR_0004s20030 N 0.797
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.795
Glyma20g00950.1 Glycine max Glyma20g00950.1 N 0.794
mgf003009m Mimulus guttatus mgf003009m N 0.786
mgf001260m Mimulus guttatus mgf001260m N 0.786
chr3.CM0396.90.nc Lotus japonicus chr3.CM0396.90.nc N 0.786
mgf004170m Mimulus guttatus mgf004170m N 0.786
estExt_fgenesh3_pg.C_90081 Chlorella NC64A estExt_fgenesh3_pg.C_90081 N 0.775
Cucsa.200060 Cucumis sativus Cucsa.200060 N 0.758
gwEuk.2.46.1 Phytophthora ramorum gwEuk.2.46.1 N 0.750
s_458600 Phytophthora sojae s_458600 N 0.732
PITG_05688 Phytophthora infestans PITG_05688 N 0.732
fgenesh1_pm.C_Chr_15000025 Ostreococcus lucimarinus fgenesh1_pm.C_Chr_15000025 N 0.730
29991.m000639 Ricinus communis 29991.m000639 N 0.728
1600010121 Ostreococcus tauri 1600010121 N 0.724
estExt_fgenesh1_kg.C_153200001 Phytophthora capsici estExt_fgenesh1_kg.C_153200001 N 0.723
e_gw1.11.331.1 Ostreococcus RCC809 e_gw1.11.331.1 N 0.716