MDP0000321343 (Malus x domestica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		MDP0000321343 T01107_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000321343 CCCH ZF 299 325
MDP0000321343 RRM 368 426
MDP0000321343 CCCH ZF 435 460

Links

Other CCCH ZF,RRM family RBPs
Other Malus x domestica RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30170.m013808 Ricinus communis 30170.m013808 N 0.964
U2AF35B Arabidopsis thaliana AT5G42820-TAIR-G N 0.946
XM_002863687.1 Arabidopsis lyrata fgenesh2_kg.8__553__AT5G42820.1 N 0.946
Cucsa.272480 Cucumis sativus Cucsa.272480 N 0.946
cassava23933.valid.m1 Manihot esculenta cassava23933.valid.m1 N 0.946
B9H5X4_POPTR Populus trichocarpa POPTR_0005s27940 N 0.946
mgf001805m Mimulus guttatus mgf001805m N 0.938
XM_002890695.1 Arabidopsis lyrata fgenesh2_kg.1__2923__AT1G27650.1 N 0.938
ATU2AF35A Arabidopsis thaliana AT1G27650-TAIR-G N 0.938
Glyma07g20090.1 Glycine max Glyma07g20090.1 N 0.929
GRMZM2G031827 Zea mays GRMZM2G031827 N 0.929
GRMZM2G025014 Zea mays GRMZM2G025014 N 0.929
SB09G028530 Sorghum bicolor Sb09g028530 N 0.929
GRMZM2G020928 Zea mays GRMZM2G020928 N 0.929
PDK_20s1490591g003 Phoenix dactylifera PDK_20s1490591g003 N 0.929
SB03G030670 Sorghum bicolor Sb03g030670 N 0.920
Sb02g028540 Sorghum bicolor Sb02g028540 N 0.911
LOC_Os05g48960 Oryza sativa LOC_Os05g48960 N 0.911
BRADI2G16520 Brachypodium distachyon BRADI2G16520 N 0.911
BGIOSIBCE020024 Oryza indica BGIOSIBCE020024 N 0.911
LOC_Os09g31482 Oryza sativa LOC_Os09g31482 N 0.902
BGIOSIBCE030417 Oryza indica BGIOSIBCE030417 N 0.902
GRMZM2G177229 Zea mays GRMZM2G177229 N 0.893
BRADI2G46080 Brachypodium distachyon BRADI2G46080 N 0.884
BRADI4G33870 Brachypodium distachyon BRADI4G33870 N 0.884
gw1.15.161.1 Physcomitrella patens gw1.15.161.1 N 0.875
estExt_gwp_gw1.C_2150084 Physcomitrella patens estExt_gwp_gw1.C_2150084 N 0.875
B9GPM3_POPTR Populus trichocarpa POPTR_0002s00480 N 0.871
fgenesh1_pm.C_scaffold_1000024 Selaginella moellendorfii fgenesh1_pm.C_scaffold_1000024 N 0.866
cassava13474.valid.m1 Manihot esculenta cassava13474.valid.m1 N 0.848
GSVIVG00033771001 Vitis vinifera GSVIVG00033771001 N 0.839
ppa008459m Prunus persica ppa008459m N 0.839
GRMZM2G162119 Zea mays GRMZM2G162119 N 0.839
MDP0000179037 Malus x domestica MDP0000179037 N 0.839
Glyma20g00950.1 Glycine max Glyma20g00950.1 N 0.833
mgf010816m Mimulus guttatus mgf010816m N 0.830
Glyma19g37530.1 Glycine max Glyma19g37530.1 N 0.830
Glyma03g34840.1 Glycine max Glyma03g34840.1 N 0.830
Cucsa.083100 Cucumis sativus Cucsa.083100 N 0.830
29092.m000448 Ricinus communis 29092.m000448 N 0.830
cassava30766.valid.m1 Manihot esculenta cassava30766.valid.m1 N 0.830
cassava30765.valid.m1 Manihot esculenta cassava30765.valid.m1 N 0.830
POPTR_0006s11790 Populus trichocarpa POPTR_0006s11790 N 0.830
MDP0000640144 Malus x domestica MDP0000640144 N 0.830
cassava34088.m1 Manihot esculenta cassava34088.m1 N 0.830
ppa025949m Prunus persica ppa025949m N 0.830
chr1.CM0378.200.nd Lotus japonicus chr1.CM0378.200.nd N 0.821
cassava12245.valid.m1 Manihot esculenta cassava12245.valid.m1 N 0.821
MDP0000284705 Malus x domestica MDP0000284705 N 0.821
Chlre2_kg.scaffold_3000449 Chlamydomonas reinhardtii Chlre2_kg.scaffold_3000449 N 0.821
cassava12246.valid.m1 Manihot esculenta cassava12246.valid.m1 N 0.821
LjB15A13.120.nd Lotus japonicus LjB15A13.120.nd N 0.821
Glyma12g30590.1 Glycine max Glyma12g30590.1 N 0.821
estExt_Genewise1Plus.C_470052 Volvox carteri estExt_Genewise1Plus.C_470052 N 0.821
estExt_fgeneshCV_kg.C_10018 Chlorella vulgaris estExt_fgeneshCV_kg.C_10018 N 0.812
XM_002877317.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000707 N 0.812
fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA Coccomyxa C 169 fgenesh1_kg.1_#_193_#_3831_1_CBOZ_CBPA N 0.812
mgf004170m Mimulus guttatus mgf004170m N 0.804
mgf003009m Mimulus guttatus mgf003009m N 0.804
mgf001260m Mimulus guttatus mgf001260m N 0.804
B9MYK3_POPTR Populus trichocarpa POPTR_0004s20030 N 0.797
estExt_Genewise1Plus.C_140110 Micromonas pusilla estExt_Genewise1Plus.C_140110 N 0.795
Medtr1g039850 Medicago truncatula Medtr1g039850 N 0.792
chr3.CM0396.90.nc Lotus japonicus chr3.CM0396.90.nc N 0.777
Cucsa.200060 Cucumis sativus Cucsa.200060 N 0.766
estExt_fgenesh3_pg.C_90081 Chlorella NC64A estExt_fgenesh3_pg.C_90081 N 0.758
gwEuk.2.46.1 Phytophthora ramorum gwEuk.2.46.1 N 0.750
29991.m000639 Ricinus communis 29991.m000639 N 0.736
s_458600 Phytophthora sojae s_458600 N 0.732
fgenesh1_pm.C_Chr_15000025 Ostreococcus lucimarinus fgenesh1_pm.C_Chr_15000025 N 0.730
1600010121 Ostreococcus tauri 1600010121 N 0.724
estExt_fgenesh1_kg.C_153200001 Phytophthora capsici estExt_fgenesh1_kg.C_153200001 N 0.723
PITG_05688 Phytophthora infestans PITG_05688 N 0.723
e_gw1.11.331.1 Ostreococcus RCC809 e_gw1.11.331.1 N 0.716