CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CAOG_04504
(
Capsaspora owczarzaki
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CAOG_04504
T01258_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CAOG_04504T0
CCCH ZF
92
115
SVVCAFFKAGTCQKGNKCRFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Capsaspora owczarzaki
RBPs
51 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gwh2.4.391.1
Phanerochaete chrysosporium
gwh2.4.391.1
N
0.769
e_gw1.2.668.1
Sporobolomyces roseus
e_gw1.2.668.1
N
0.769
XP_002158150.1
Hydra magnipapillata
XP_002158150.1
N
0.769
GD10149
Drosophila simulans
FBgn0181924
N
0.769
ZC3H15
Sus scrofa
ENSSSCG00000016026
N
0.731
ZC3H15
Spermophilus tridecemlineatus
ENSSTOG00000006873
N
0.731
ZC3H15
Tupaia belangeri
ENSTBEG00000015530
N
0.731
ZC3H15
Taeniopygia guttata
ENSTGUG00000011131
N
0.731
ZC3H15
Sorex araneus
ENSSARG00000012071
N
0.731
Zc3h15
Rattus norvegicus
ENSRNOG00000005256
N
0.731
ENSPPYG00000013004
Pongo pygmaeus
ENSPPYG00000013004
N
0.731
ZC3H15
Pan troglodytes
ENSPTRG00000012717
N
0.731
ZC3H15
Pteropus vampyrus
ENSPVAG00000004828
N
0.731
ZC3H15
Tarsius syrichta
ENSTSYG00000011019
N
0.731
ZC3H15
Tursiops truncatus
ENSTTRG00000012425
N
0.731
estExt_gwp.C_6160004
Branchiostoma floridae
estExt_gwp.C_6160004
N
0.731
BAD89267
Xenopus laevis
BAD89267
N
0.731
s_451242
Phytophthora sojae
s_451242
N
0.731
Ame_R017931
Ailuropoda melanoleuca
Ame_R017931
N
0.731
Q6DD06
Xenopus laevis
Q6DD06
N
0.731
SB03G039020
Sorghum bicolor
Sb03g039020
N
0.731
ZC3H15
Vicugna pacos
ENSVPAG00000006980
N
0.731
ZC3H15
Procavia capensis
ENSPCAG00000008499
N
0.731
GK21573
Drosophila willistoni
FBgn0223565
N
0.731
AAH77826
Xenopus laevis
AAH77826
N
0.731
ENSOPRG00000015790
Ochotona princeps
ENSOPRG00000015790
N
0.731
ENSCPOG00000012965
Cavia porcellus
ENSCPOG00000012965
N
0.731
ZC3H15
Callithrix jacchus
ENSCJAG00000005931
N
0.731
Zc3h15
Dipodomys ordii
ENSDORG00000011664
N
0.731
LOC100068634
Equus caballus
ENSECAG00000017149
N
0.731
ZC3H15
Felis catus
ENSFCAG00000008213
N
0.731
ZC3H15
Choloepus hoffmanni
ENSCHOG00000011958
N
0.731
ZC3H15
Canis familiaris
ENSCAFG00000014494
N
0.731
PITG_04608
Phytophthora infestans
PITG_04608
N
0.731
amel4_ncbi_hmm11607
Apis mellifera
amel4_ncbi_hmm11607
N
0.731
nasonia_NCBI_hmm1144383
Nasonia vitripennis
nasonia_NCBI_hmm1144383
N
0.731
ZC3HF_BOVIN
Bos taurus
ENSBTAG00000021762
N
0.731
ZC3H15
Homo sapiens
ENSG00000065548
N
0.731
ZC3HF_CHICK
Gallus gallus
ENSGALG00000002670
N
0.731
Zc3h15
Mus musculus
ENSMUSG00000027091
N
0.731
ITGAV
Monodelphis domestica
ENSMODG00000010653
N
0.731
ZC3H15
Ornithorhynchus anatinus
ENSOANG00000015742
N
0.731
ENSOCUG00000011903
Oryctolagus cuniculus
ENSOCUG00000011903
N
0.731
ZC3H15
Otolemur garnettii
ENSOGAG00000002182
N
0.731
ZC3H15
Macaca mulatta
ENSMMUG00000017248
N
0.731
ZC3H15
Myotis lucifugus
ENSMLUG00000007741
N
0.731
ZC3H15
Gorilla gorilla
ENSGGOG00000000073
N
0.731
ENSLAFG00000001563
Loxodonta africana
ENSLAFG00000001563
N
0.731
ZC3H15
Meleagris gallopavo
ENSMGAG00000004447
N
0.731
ZC3H15
Microcebus murinus
ENSMICG00000014245
N
0.731
CC1G_07829
Coprinopsis cinerea
CC1G_07829
N
0.731