SB03G039020 (Sorghum bicolor)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Sb03g039020 T04110_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Sb03g039020.1 CCCH ZF 91 116

Links

Other CCCH ZF family RBPs
Other Sorghum bicolor RBPs

118 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G032258 Zea mays GRMZM2G032258 N 0.962
PDK_20s1366191g001 Phoenix dactylifera PDK_20s1366191g001 N 0.962
XM_002883888.1 Arabidopsis lyrata fgenesh2_kg.3__3143__AT2G20280.1 N 0.962
BRADI2G54220 Brachypodium distachyon BRADI2G54220 N 0.962
LOC_Os01g61830 Oryza sativa LOC_Os01g61830 N 0.962
AT2G20280 Arabidopsis thaliana AT2G20280-TAIR-G N 0.962
BGIOSIBCE004176 Oryza indica BGIOSIBCE004176 N 0.962
29805.m001499 Ricinus communis 29805.m001499 N 0.923
B9HM02_POPTR Populus trichocarpa POPTR_0008s04540 N 0.923
chr5.LjT08O17.30.nd Lotus japonicus chr5.LjT08O17.30.nd N 0.885
ppa007639m Prunus persica ppa007639m N 0.885
PK12342.1 Cannabis sativa PK12342.1 N 0.885
ppa007903m Prunus persica ppa007903m N 0.885
Glyma19g36150.1 Glycine max Glyma19g36150.1 N 0.885
MDP0000161236 Malus x domestica MDP0000161236 N 0.885
EFA82915.1 Polysphondylium pallidum EFA82915.1 N 0.885
Glyma03g33420.1 Glycine max Glyma03g33420.1 N 0.885
B9MT73_POPTR Populus trichocarpa POPTR_0308s00200 N 0.885
Glyma10g05550.1 Glycine max Glyma10g05550.1 N 0.885
POPTR_0006s13510 Populus trichocarpa POPTR_0006s13510 N 0.885
gw1.233.15.1 Physcomitrella patens gw1.233.15.1 N 0.846
Glyma13g19900.1 Glycine max Glyma13g19900.1 N 0.846
cassava28857.valid.m1 Manihot esculenta cassava28857.valid.m1 N 0.846
cassava28858.valid.m1 Manihot esculenta cassava28858.valid.m1 N 0.846
cassava3130.m1 Manihot esculenta cassava3130.m1 N 0.846
GSVIVG00016357001 Vitis vinifera GSVIVG00016357001 N 0.846
SPPG_00188 Spizellomyces punctatus SPPG_00188 N 0.846
nasonia_NCBI_hmm1144383 Nasonia vitripennis nasonia_NCBI_hmm1144383 N 0.808
amel4_ncbi_hmm11607 Apis mellifera amel4_ncbi_hmm11607 N 0.808
ZC3H15 Sus scrofa ENSSSCG00000016026 N 0.808
ZC3H15 Sorex araneus ENSSARG00000012071 N 0.808
LOC100068634 Equus caballus ENSECAG00000017149 N 0.808
ZC3H15 Gorilla gorilla ENSGGOG00000000073 N 0.808
ENSLAFG00000001563 Loxodonta africana ENSLAFG00000001563 N 0.808
ZC3H15 Homo sapiens ENSG00000065548 N 0.808
ZC3HF_CHICK Gallus gallus ENSGALG00000002670 N 0.808
ZC3HF_BOVIN Bos taurus ENSBTAG00000021762 N 0.808
ZC3H15 Canis familiaris ENSCAFG00000014494 N 0.808
ZC3H15 Spermophilus tridecemlineatus ENSSTOG00000006873 N 0.808
ZC3H15 Callithrix jacchus ENSCJAG00000005931 N 0.808
ZC3H15 Pan troglodytes ENSPTRG00000012717 N 0.808
Zc3h15 Rattus norvegicus ENSRNOG00000005256 N 0.808
ZC3H15 Choloepus hoffmanni ENSCHOG00000011958 N 0.808
ZC3H15 Pteropus vampyrus ENSPVAG00000004828 N 0.808
ENSCPOG00000012965 Cavia porcellus ENSCPOG00000012965 N 0.808
Zc3h15 Dipodomys ordii ENSDORG00000011664 N 0.808
AAH77826 Xenopus laevis AAH77826 N 0.808
Ame_R017931 Ailuropoda melanoleuca Ame_R017931 N 0.808
Zc3h15 Mus musculus ENSMUSG00000027091 N 0.808
ITGAV Monodelphis domestica ENSMODG00000010653 N 0.808
ENSPPYG00000013004 Pongo pygmaeus ENSPPYG00000013004 N 0.808
ZC3H15 Ornithorhynchus anatinus ENSOANG00000015742 N 0.808
ENSOCUG00000011903 Oryctolagus cuniculus ENSOCUG00000011903 N 0.808
ZC3H15 Procavia capensis ENSPCAG00000008499 N 0.808
e_gw1.3.744.1 Selaginella moellendorfii e_gw1.3.744.1 N 0.808
ENSOPRG00000015790 Ochotona princeps ENSOPRG00000015790 N 0.808
ZC3H15 Otolemur garnettii ENSOGAG00000002182 N 0.808
ZC3H15 Vicugna pacos ENSVPAG00000006980 N 0.808
ZC3H15 Macaca mulatta ENSMMUG00000017248 N 0.808
ZC3H15 Microcebus murinus ENSMICG00000014245 N 0.808
ZC3H15 Meleagris gallopavo ENSMGAG00000004447 N 0.808
ZC3H15 Tupaia belangeri ENSTBEG00000015530 N 0.808
ZC3H15 Taeniopygia guttata ENSTGUG00000011131 N 0.808
ZC3H15 Felis catus ENSFCAG00000008213 N 0.808
ZC3H15 Myotis lucifugus ENSMLUG00000007741 N 0.808
BAD89267 Xenopus laevis BAD89267 N 0.808
Q6DD06 Xenopus laevis Q6DD06 N 0.808
ZC3H15 Tursiops truncatus ENSTTRG00000012425 N 0.808
ZC3H15 Tarsius syrichta ENSTSYG00000011019 N 0.808
ZC3H15 Oryzias latipes ENSORLG00000018606 N 0.769
ENSOCUG00000011909 Oryctolagus cuniculus ENSOCUG00000011909 N 0.769
ZC3H15 Gasterosteus aculeatus ENSGACG00000011648 N 0.769
PGUG_02031 Candida guilliermondii PGUG_02031 N 0.769
BGIBMGA011604 Bombyx mori BGIBMGA011604 N 0.769
GD10149 Drosophila simulans FBgn0181924 N 0.769
zc3h15 Xenopus tropicalis ENSXETG00000013336 N 0.769
GK21573 Drosophila willistoni FBgn0223565 N 0.769
estExt_gwp.C_6160004 Branchiostoma floridae estExt_gwp.C_6160004 N 0.769
72073 Helobdella robusta 72073 N 0.769
e_gw1.2.668.1 Sporobolomyces roseus e_gw1.2.668.1 N 0.769
ENSETEG00000015556 Echinops telfairi ENSETEG00000015556 N 0.769
XP_002158150.1 Hydra magnipapillata XP_002158150.1 N 0.769
ZC3H15 Anolis carolinensis ENSACAG00000001916 N 0.769
zc3h15 Danio rerio ENSDARG00000015889 N 0.769
ZC3H15 Dasypus novemcinctus ENSDNOG00000018840 N 0.769
RGD1564243 Rattus norvegicus ENSRNOG00000015276 N 0.769
DGIL_AUG5s16g7t1 Acyrtosiphon pisum DGIL_AUG5s16g7t1 N 0.769
ZC3H15 Takifugu rubripes ENSTRUG00000004988 N 0.769
CTRG_02162 Candida tropicalis CTRG_02162 N 0.769
ZC3H15 Tetraodon nigroviridis ENSTNIG00000009860 N 0.731
NCU01795 Neurospora crassa NCU01795 N 0.731
F27D4.4 Caenorhabditis elegans F27D4.4 N 0.731
CBN03898 Caenorhabditis brenneri CBN03898 N 0.731
s_451242 Phytophthora sojae s_451242 N 0.731
PASA_GEN_1200032 Daphnia pulex PASA_GEN_1200032 N 0.731
A7TLF2_VANPO Vanderwaltozyma polyspora A7TLF2_VANPO N 0.731
e_gw1.8.939.1 Pleurotus ostreatus e_gw1.8.939.1 N 0.731
Minc08580 Meloidogyne incognita Minc08580 N 0.731
gwh2.4.391.1 Phanerochaete chrysosporium gwh2.4.391.1 N 0.731
gw1.1.348.1 Phycomyces blakesleeanus gw1.1.348.1 N 0.731
e_gw.53.202.1 Nematostella vectensis e_gw.53.202.1 N 0.731
estExt_fgenesh1_pm.C_130118 Neurospora tetrasperma estExt_fgenesh1_pm.C_130118 N 0.731
estExt_Genewise1.C_110154 Neurospora discreta estExt_Genewise1.C_110154 N 0.731
estExt_Genewise1Plus.C_sca_2280007 Lottia gigantea estExt_Genewise1Plus.C_sca_2280007 N 0.731
ZYRO0C15598g Zygosaccharomyces rouxii ZYRO0C15598g N 0.731
Bm1_13920 Brugia malayi Bm1_13920 N 0.731
WUBG_13399 Wuchereria bancrofti WUBG_13399 N 0.731
SPRG_03683 Saprolegnia parasitica SPRG_03683 N 0.731
CBG00292 Caenorhabditis briggsae CBG00292 N 0.731
CBN11546 Caenorhabditis brenneri CBN11546 N 0.731
CJA17052 Caenorhabditis japonica CJA17052 N 0.731
PITG_04608 Phytophthora infestans PITG_04608 N 0.731
LOAG_00784 Loa loa LOAG_00784 N 0.731
CAOG_04504 Capsaspora owczarzaki CAOG_04504 N 0.731
CLUG_02796 Candida lusitaniae CLUG_02796 N 0.731
CPAG_03559 Candida parapsilosis CPAG_03559 N 0.731
DEHA0A09449g Debaryomyces hansenii DEHA0A09449g N 0.731
CRE20408 Caenorhabditis remanei CRE20408 N 0.731