CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CTRG_02162
(
Candida tropicalis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
CTRG_02162
T01351_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CTRT_02162
CCCH ZF
96
121
PKSILCEFFKNGVCTKGNKCKFSHDP
Links
Other
CCCH ZF
family RBPs
Other
Candida tropicalis
RBPs
103 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPAG_03559
Candida parapsilosis
CPAG_03559
N
0.923
CLUG_02796
Candida lusitaniae
CLUG_02796
N
0.923
PGUG_02031
Candida guilliermondii
PGUG_02031
N
0.885
MDP0000161236
Malus x domestica
MDP0000161236
N
0.846
Glyma19g36150.1
Glycine max
Glyma19g36150.1
N
0.846
Glyma03g33420.1
Glycine max
Glyma03g33420.1
N
0.846
ppa007639m
Prunus persica
ppa007639m
N
0.846
PK12342.1
Cannabis sativa
PK12342.1
N
0.846
29805.m001499
Ricinus communis
29805.m001499
N
0.808
XM_002883888.1
Arabidopsis lyrata
fgenesh2_kg.3__3143__AT2G20280.1
N
0.808
chr5.LjT08O17.30.nd
Lotus japonicus
chr5.LjT08O17.30.nd
N
0.808
EFA82915.1
Polysphondylium pallidum
EFA82915.1
N
0.808
PITG_04608
Phytophthora infestans
PITG_04608
N
0.808
Glyma10g05550.1
Glycine max
Glyma10g05550.1
N
0.808
GRMZM2G032258
Zea mays
GRMZM2G032258
N
0.808
PDK_20s1366191g001
Phoenix dactylifera
PDK_20s1366191g001
N
0.808
Minc08580
Meloidogyne incognita
Minc08580
N
0.808
AT2G20280
Arabidopsis thaliana
AT2G20280-TAIR-G
N
0.808
BRADI2G54220
Brachypodium distachyon
BRADI2G54220
N
0.808
B9HM02_POPTR
Populus trichocarpa
POPTR_0008s04540
N
0.808
POPTR_0006s13510
Populus trichocarpa
POPTR_0006s13510
N
0.808
B9MT73_POPTR
Populus trichocarpa
POPTR_0308s00200
N
0.808
DEHA0A09449g
Debaryomyces hansenii
DEHA0A09449g
N
0.769
cassava28858.valid.m1
Manihot esculenta
cassava28858.valid.m1
N
0.769
ZC3H15
Takifugu rubripes
ENSTRUG00000004988
N
0.769
GSVIVG00016357001
Vitis vinifera
GSVIVG00016357001
N
0.769
cassava3130.m1
Manihot esculenta
cassava3130.m1
N
0.769
LOC_Os01g61830
Oryza sativa
LOC_Os01g61830
N
0.769
SB03G039020
Sorghum bicolor
Sb03g039020
N
0.769
72073
Helobdella robusta
72073
N
0.769
ZC3H15
Oryzias latipes
ENSORLG00000018606
N
0.769
Glyma13g19900.1
Glycine max
Glyma13g19900.1
N
0.769
cassava28857.valid.m1
Manihot esculenta
cassava28857.valid.m1
N
0.769
s_451242
Phytophthora sojae
s_451242
N
0.769
BGIOSIBCE004176
Oryza indica
BGIOSIBCE004176
N
0.769
zc3h15
Danio rerio
ENSDARG00000015889
N
0.769
ppa007903m
Prunus persica
ppa007903m
N
0.769
ZC3H15
Gasterosteus aculeatus
ENSGACG00000011648
N
0.769
Q6DD06
Xenopus laevis
Q6DD06
N
0.731
BAD89267
Xenopus laevis
BAD89267
N
0.731
CC1G_07829
Coprinopsis cinerea
CC1G_07829
N
0.731
CIMG_09790
Coccidioides immitis
CIMG_09790
N
0.731
F27D4.4
Caenorhabditis elegans
F27D4.4
N
0.731
GD10149
Drosophila simulans
FBgn0181924
N
0.731
CPSG_09723
Coccidioides posadasii
CPSG_09723
N
0.731
GK21573
Drosophila willistoni
FBgn0223565
N
0.731
AAH77826
Xenopus laevis
AAH77826
N
0.731
Pc21g03130
Penicillium chrysogenum
Pc21g03130
N
0.731
e_gw1.2.668.1
Sporobolomyces roseus
e_gw1.2.668.1
N
0.731
estExt_Genewise1Plus.C_sca_2280007
Lottia gigantea
estExt_Genewise1Plus.C_sca_2280007
N
0.731
PASA_GEN_1200032
Daphnia pulex
PASA_GEN_1200032
N
0.731
ZC3H15
Vicugna pacos
ENSVPAG00000006980
N
0.731
Ame_R017931
Ailuropoda melanoleuca
Ame_R017931
N
0.731
fgenesh1_pg.C_scaffold_3139000003
Phytophthora capsici
fgenesh1_pg.C_scaffold_3139000003
N
0.731
estExt_fgenesh1_pm.C_180201
Phytophthora capsici
estExt_fgenesh1_pm.C_180201
N
0.731
Aqu1.222312
Amphimedon queenslandica
Aqu1.222312
N
0.731
gwh2.4.391.1
Phanerochaete chrysosporium
gwh2.4.391.1
N
0.731
ZC3H15
Tupaia belangeri
ENSTBEG00000015530
N
0.731
ZC3H15
Callithrix jacchus
ENSCJAG00000005931
N
0.731
ZC3H15
Choloepus hoffmanni
ENSCHOG00000011958
N
0.731
ZC3H15
Canis familiaris
ENSCAFG00000014494
N
0.731
ZC3HF_BOVIN
Bos taurus
ENSBTAG00000021762
N
0.731
ENSCPOG00000012965
Cavia porcellus
ENSCPOG00000012965
N
0.731
Zc3h15
Dipodomys ordii
ENSDORG00000011664
N
0.731
ZC3H15
Homo sapiens
ENSG00000065548
N
0.731
ZC3H15
Felis catus
ENSFCAG00000008213
N
0.731
ENSETEG00000015556
Echinops telfairi
ENSETEG00000015556
N
0.731
LOC100068634
Equus caballus
ENSECAG00000017149
N
0.731
CRE20408
Caenorhabditis remanei
CRE20408
N
0.731
CJA17052
Caenorhabditis japonica
CJA17052
N
0.731
DGIL_AUG5s16g7t1
Acyrtosiphon pisum
DGIL_AUG5s16g7t1
N
0.731
amel4_ncbi_hmm11607
Apis mellifera
amel4_ncbi_hmm11607
N
0.731
UREG_04706
Uncinocarpus reesii
UREG_04706
N
0.731
PTTG_08784
Puccinia triticina
PTTG_08784
N
0.731
nasonia_NCBI_hmm1144383
Nasonia vitripennis
nasonia_NCBI_hmm1144383
N
0.731
ACLA_016930
Aspergillus clavatus
CADACLAG00000891
N
0.731
CBN11546
Caenorhabditis brenneri
CBN11546
N
0.731
CBN03898
Caenorhabditis brenneri
CBN03898
N
0.731
CBG00292
Caenorhabditis briggsae
CBG00292
N
0.731
ZC3HF_CHICK
Gallus gallus
ENSGALG00000002670
N
0.731
ZC3H15
Gorilla gorilla
ENSGGOG00000000073
N
0.731
Zc3h15
Rattus norvegicus
ENSRNOG00000005256
N
0.731
ZC3H15
Pteropus vampyrus
ENSPVAG00000004828
N
0.731
ZC3H15
Pan troglodytes
ENSPTRG00000012717
N
0.731
ENSPPYG00000013004
Pongo pygmaeus
ENSPPYG00000013004
N
0.731
ZC3H15
Sorex araneus
ENSSARG00000012071
N
0.731
ZC3H15
Sus scrofa
ENSSSCG00000016026
N
0.731
ZC3H15
Tarsius syrichta
ENSTSYG00000011019
N
0.731
ZC3H15
Tetraodon nigroviridis
ENSTNIG00000009860
N
0.731
ZC3H15
Taeniopygia guttata
ENSTGUG00000011131
N
0.731
ZC3H15
Spermophilus tridecemlineatus
ENSSTOG00000006873
N
0.731
ZC3H15
Procavia capensis
ENSPCAG00000008499
N
0.731
ENSOPRG00000015790
Ochotona princeps
ENSOPRG00000015790
N
0.731
ZC3H15
Macaca mulatta
ENSMMUG00000017248
N
0.731
ZC3H15
Myotis lucifugus
ENSMLUG00000007741
N
0.731
ZC3H15
Microcebus murinus
ENSMICG00000014245
N
0.731
ZC3H15
Meleagris gallopavo
ENSMGAG00000004447
N
0.731
ITGAV
Monodelphis domestica
ENSMODG00000010653
N
0.731
Zc3h15
Mus musculus
ENSMUSG00000027091
N
0.731
ZC3H15
Otolemur garnettii
ENSOGAG00000002182
N
0.731
ENSOCUG00000011903
Oryctolagus cuniculus
ENSOCUG00000011903
N
0.731
ZC3H15
Ornithorhynchus anatinus
ENSOANG00000015742
N
0.731
ZC3H15
Tursiops truncatus
ENSTTRG00000012425
N
0.731