fgenesh1_pg.C_scaffold_3139000003 (Phytophthora capsici)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh1_pg.C_scaffold_3139000003 T06122_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_3139000003 CCCH ZF 7 32

Links

Other CCCH ZF family RBPs
Other Phytophthora capsici RBPs

84 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh1_pm.C_180201 Phytophthora capsici estExt_fgenesh1_pm.C_180201 N 1.000
s_451242 Phytophthora sojae s_451242 N 0.962
PITG_04608 Phytophthora infestans PITG_04608 N 0.923
gwh2.4.391.1 Phanerochaete chrysosporium gwh2.4.391.1 N 0.808
e_gw1.2.668.1 Sporobolomyces roseus e_gw1.2.668.1 N 0.808
ENSCING00000006888 Ciona intestinalis ENSCING00000006888 N 0.808
PASA_GEN_1200032 Daphnia pulex PASA_GEN_1200032 N 0.769
zc3h15 Danio rerio ENSDARG00000015889 N 0.769
ZC3H15 Gasterosteus aculeatus ENSGACG00000011648 N 0.769
ZC3H15 Takifugu rubripes ENSTRUG00000004988 N 0.769
ENSLAFG00000001563 Loxodonta africana ENSLAFG00000001563 N 0.769
72073 Helobdella robusta 72073 N 0.769
DGIL_AUG5s16g7t1 Acyrtosiphon pisum DGIL_AUG5s16g7t1 N 0.769
CC1G_07829 Coprinopsis cinerea CC1G_07829 N 0.769
ZC3H15 Oryzias latipes ENSORLG00000018606 N 0.769
e_gw1.8.939.1 Pleurotus ostreatus e_gw1.8.939.1 N 0.769
Minc08580 Meloidogyne incognita Minc08580 N 0.769
CPAG_03559 Candida parapsilosis CPAG_03559 N 0.769
BGIBMGA011604 Bombyx mori BGIBMGA011604 N 0.769
EFA82915.1 Polysphondylium pallidum EFA82915.1 N 0.769
ZC3H15 Taeniopygia guttata ENSTGUG00000011131 N 0.731
ZC3H15 Tetraodon nigroviridis ENSTNIG00000009860 N 0.731
ZC3H15 Tarsius syrichta ENSTSYG00000011019 N 0.731
ZC3H15 Tupaia belangeri ENSTBEG00000015530 N 0.731
ZC3H15 Pteropus vampyrus ENSPVAG00000004828 N 0.731
ENSPPYG00000013004 Pongo pygmaeus ENSPPYG00000013004 N 0.731
ZC3H15 Sorex araneus ENSSARG00000012071 N 0.731
Zc3h15 Rattus norvegicus ENSRNOG00000005256 N 0.731
ZC3H15 Pan troglodytes ENSPTRG00000012717 N 0.731
ZC3H15 Sus scrofa ENSSSCG00000016026 N 0.731
ZC3H15 Spermophilus tridecemlineatus ENSSTOG00000006873 N 0.731
RGD1564243 Rattus norvegicus ENSRNOG00000015276 N 0.731
B9HM02_POPTR Populus trichocarpa POPTR_0008s04540 N 0.731
e_gw.53.202.1 Nematostella vectensis e_gw.53.202.1 N 0.731
e_gw1.19.91.1 Melampsora laricis populina e_gw1.19.91.1 N 0.731
estExt_gwp.C_6160004 Branchiostoma floridae estExt_gwp.C_6160004 N 0.731
GRMZM2G032258 Zea mays GRMZM2G032258 N 0.731
Ame_R017931 Ailuropoda melanoleuca Ame_R017931 N 0.731
ACL082W Ashbya gossypii ACL082W N 0.731
29805.m001499 Ricinus communis 29805.m001499 N 0.731
ZC3H15 Procavia capensis ENSPCAG00000008499 N 0.731
GD10149 Drosophila simulans FBgn0181924 N 0.731
ZC3H15 Vicugna pacos ENSVPAG00000006980 N 0.731
GK21573 Drosophila willistoni FBgn0223565 N 0.731
XM_002883888.1 Arabidopsis lyrata fgenesh2_kg.3__3143__AT2G20280.1 N 0.731
PHUM521160 Pediculus humanus PHUM521160 N 0.731
ZC3H15 Tursiops truncatus ENSTTRG00000012425 N 0.731
ZC3H15 Ornithorhynchus anatinus ENSOANG00000015742 N 0.731
AT2G20280 Arabidopsis thaliana AT2G20280-TAIR-G N 0.731
nasonia_NCBI_hmm1144383 Nasonia vitripennis nasonia_NCBI_hmm1144383 N 0.731
amel4_ncbi_hmm11607 Apis mellifera amel4_ncbi_hmm11607 N 0.731
BRADI2G54220 Brachypodium distachyon BRADI2G54220 N 0.731
ZC3HF_BOVIN Bos taurus ENSBTAG00000021762 N 0.731
ZC3H15 Callithrix jacchus ENSCJAG00000005931 N 0.731
ZC3H15 Choloepus hoffmanni ENSCHOG00000011958 N 0.731
ZC3H15 Canis familiaris ENSCAFG00000014494 N 0.731
SPPG_00188 Spizellomyces punctatus SPPG_00188 N 0.731
PGUG_02031 Candida guilliermondii PGUG_02031 N 0.731
AAH77826 Xenopus laevis AAH77826 N 0.731
SAKL0E09966g Lachancea kluyveri SAKL0E09966g N 0.731
PDK_20s1366191g001 Phoenix dactylifera PDK_20s1366191g001 N 0.731
BAD89267 Xenopus laevis BAD89267 N 0.731
Q6DD06 Xenopus laevis Q6DD06 N 0.731
DEHA0A09449g Debaryomyces hansenii DEHA0A09449g N 0.731
CTRG_02162 Candida tropicalis CTRG_02162 N 0.731
ENSCPOG00000012965 Cavia porcellus ENSCPOG00000012965 N 0.731
ZC3H15 Dasypus novemcinctus ENSDNOG00000018840 N 0.731
Zc3h15 Mus musculus ENSMUSG00000027091 N 0.731
ITGAV Monodelphis domestica ENSMODG00000010653 N 0.731
ZC3H15 Macaca mulatta ENSMMUG00000017248 N 0.731
Kwal_2969 Kluyveromyces waltii Kwal_2969 N 0.731
ENSOCUG00000011903 Oryctolagus cuniculus ENSOCUG00000011903 N 0.731
ZC3H15 Otolemur garnettii ENSOGAG00000002182 N 0.731
ENSOCUG00000011909 Oryctolagus cuniculus ENSOCUG00000011909 N 0.731
ZC3H15 Myotis lucifugus ENSMLUG00000007741 N 0.731
ZC3H15 Microcebus murinus ENSMICG00000014245 N 0.731
ZC3H15 Felis catus ENSFCAG00000008213 N 0.731
LOC100068634 Equus caballus ENSECAG00000017149 N 0.731
Zc3h15 Dipodomys ordii ENSDORG00000011664 N 0.731
ZC3H15 Homo sapiens ENSG00000065548 N 0.731
ZC3HF_CHICK Gallus gallus ENSGALG00000002670 N 0.731
ZC3H15 Meleagris gallopavo ENSMGAG00000004447 N 0.731
ZC3H15 Gorilla gorilla ENSGGOG00000000073 N 0.731
ENSOPRG00000015790 Ochotona princeps ENSOPRG00000015790 N 0.731