CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SPOG_02388
(
Schizosaccharomyces cryophilus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
SPOG_02388
T01589_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPOG_02388T0
CCCH ZF
42
66
QHVPCKFFRHGTCTAGENCPFSHSL
SPOG_02388T0
CCCH ZF
69
93
ERPVCKYHLKGNCKFGSKCALSHSL
Links
Other
CCCH ZF
family RBPs
Other
Schizosaccharomyces cryophilus
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SOCG_02788
Schizosaccharomyces octosporus
SOCG_02788
N
0.960
SPCC1739.01
Schizosaccharomyces pombe
SPCC1739.01
N
0.880
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.840
SJAG_01535
Schizosaccharomyces japonicus
SJAG_01535
N
0.780
gw1.2.2109.1
Mucor circinelloides
gw1.2.2109.1
N
0.700
cps3
Schizosaccharomyces pombe
SPAC3A11.02
N
0.700