CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SPCC1739.01
(
Schizosaccharomyces pombe
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
SPCC1739.01
T04160_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPCC1739.01-1
CCCH ZF
43
67
QHVPCKFFRNGTCTAGENCPFSHSL
SPCC1739.01-1
CCCH ZF
70
92
ERPICKYFLKGNCKFGPKCALSH
Links
Other
CCCH ZF
family RBPs
Other
Schizosaccharomyces pombe
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SPOG_02388
Schizosaccharomyces cryophilus
SPOG_02388
N
0.880
SOCG_02788
Schizosaccharomyces octosporus
SOCG_02788
N
0.860
SJAG_03191
Schizosaccharomyces japonicus
SJAG_03191
N
0.820
SJAG_01535
Schizosaccharomyces japonicus
SJAG_01535
N
0.776
cps3
Schizosaccharomyces pombe
SPAC3A11.02
N
0.750
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.729
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.729
gw1.2.2109.1
Mucor circinelloides
gw1.2.2109.1
N
0.729
SOCG_00453
Schizosaccharomyces octosporus
SOCG_00453
N
0.708
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.708
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.708
GLRG_01727
Colletotrichum graminicola
GLRG_01727
N
0.700
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.700
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.700
GSTUMT00003772001
Tuber melanosporum
GSTUMT00003772001
N
0.700
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.700