CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SJAG_03191
(
Schizosaccharomyces japonicus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
SJAG_03191
T01565_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SJAG_03191T0
CCCH ZF
54
77
HVPCKFFRQGACTAGNNCPFSHSL
SJAG_03191T0
CCCH ZF
80
104
ERSPCKYFLKGNCKFGSKCALSHSP
Links
Other
CCCH ZF
family RBPs
Other
Schizosaccharomyces japonicus
RBPs
40 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SPOG_02388
Schizosaccharomyces cryophilus
SPOG_02388
N
0.840
SPCC1739.01
Schizosaccharomyces pombe
SPCC1739.01
N
0.820
SOCG_02788
Schizosaccharomyces octosporus
SOCG_02788
N
0.820
SAKL0H10846g
Lachancea kluyveri
SAKL0H10846g
N
0.765
SJAG_01535
Schizosaccharomyces japonicus
SJAG_01535
N
0.760
SNOG_02658
Stagonospora nodorum
SNOG_02658
N
0.725
AB08315.1
Alternaria brassicicola
AB08315.1
N
0.725
PTRG_01963
Pyrenophora tritici repentis
PTRG_01963
N
0.725
EAT89389.2
Phaeosphaeria nodorum
EAT89389.2
N
0.725
estExt_fgenesh1_pg.C_160206
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_160206
N
0.725
Pa_5_7490
Podospora anserina
Pa_5_7490
N
0.720
Cd36_85970
Candida dubliniensis
Cd36_85970
N
0.720
FVEG_07196
Fusarium verticillioides
FVEG_07196
N
0.720
orf19.7385
Candida albicans
orf19.7385
N
0.720
MGG_03480
Magnaporthe oryzae
MGG_03480
N
0.720
GLRG_01727
Colletotrichum graminicola
GLRG_01727
N
0.720
FOXG_04082
Fusarium oxysporum
FOXG_04082
N
0.720
CHGG_00049
Chaetomium globosum
CHGG_00049
N
0.720
gw1.28.197.1
Nectria haematococca
gw1.28.197.1
N
0.720
estExt_Genewise1.C_60695
Trichoderma atroviride
estExt_Genewise1.C_60695
N
0.720
estExt_fgenesh5_pg.C_100355
Trichoderma reesei
estExt_fgenesh5_pg.C_100355
N
0.720
e_gw1.29.29.1
Trichoderma virens
e_gw1.29.29.1
N
0.720
ANIA_03447
Aspergillus nidulans
CADANIAG00009587
N
0.712
CTRG_02259
Candida tropicalis
CTRG_02259
N
0.706
GSTUMT00003772001
Tuber melanosporum
GSTUMT00003772001
N
0.706
ADR062W
Ashbya gossypii
ADR062W
N
0.706
Scas_Contig567.6
Saccharomyces castellii
Scas_Contig567.6
N
0.706
e_gwh1.2.1.2495.1
Pichia stipitis
e_gwh1.2.1.2495.1
N
0.700
VDAG_09556
Verticillium dahliae
VDAG_09556
N
0.700
NCU05007
Neurospora crassa
NCU05007
N
0.700
VDBG_09822
Verticillium albo atrum
VDBG_09822
N
0.700
cps3
Schizosaccharomyces pombe
SPAC3A11.02
N
0.700
YALI0B12540g
Yarrowia lipolytica
YALI0B12540g
N
0.700
estExt_Genewise1.C_81229
Thielavia terrestris
estExt_Genewise1.C_81229
N
0.700
estExt_Genewise1Plus.C_130028
Neurospora discreta
estExt_Genewise1Plus.C_130028
N
0.700
estExt_Genewise1.C_110035
Neurospora tetrasperma
estExt_Genewise1.C_110035
N
0.700
XP_002493509.1
Pichia pastoris
XP_002493509.1
N
0.700
estExt_fgenesh1_kg.C_60003
Myceliophthora thermophila
estExt_fgenesh1_kg.C_60003
N
0.700
gw1.2.2109.1
Mucor circinelloides
gw1.2.2109.1
N
0.700
CLUG_02022
Candida lusitaniae
CLUG_02022
N
0.700