CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PHUM537030
(
Pediculus humanus
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
PHUM537030
T04008_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PHUM537030-PA
CCCH ZF
405
431
YKISMCRDLSLRGSCPRGANCTFAHSE
Links
Other
CCCH ZF
family RBPs
Other
Pediculus humanus
RBPs
97 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CpipJ_CPIJ008431
Culex pipiens
CpipJ_CPIJ008431
N
0.852
gw1.3.272.1
Daphnia pulex
gw1.3.272.1
N
0.852
AAEL014030
Aedes aegypti
AAEL014030
N
0.852
CPIJ008431
Culex quinquefasciatus
CPIJ008431
N
0.852
amel4_ncbi_hmm20485
Apis mellifera
amel4_ncbi_hmm20485
N
0.815
gw1.780.2.1
Capitella teleta
gw1.780.2.1
N
0.778
AGAP007114
Anopheles gambiae
AGAP007114
N
0.778
nasonia_NCBI_hmm328144
Nasonia vitripennis
nasonia_NCBI_hmm328144
N
0.778
RC3H2
Otolemur garnettii
ENSOGAG00000010678
N
0.741
RC3H2
Pan troglodytes
ENSPTRG00000021339
N
0.741
RC3H2
Spermophilus tridecemlineatus
ENSSTOG00000010655
N
0.741
RC3H2
Sus scrofa
ENSSSCG00000005575
N
0.741
RC3H2
Sorex araneus
ENSSARG00000012329
N
0.741
Rc3h2
Rattus norvegicus
ENSRNOG00000009196
N
0.741
RC3H2
Ochotona princeps
ENSOPRG00000000135
N
0.741
RC3H2
Oryctolagus cuniculus
ENSOCUG00000008804
N
0.741
RC3H2
Meleagris gallopavo
ENSMGAG00000007984
N
0.741
RC3H2
Loxodonta africana
ENSLAFG00000003521
N
0.741
RC3H2
Myotis lucifugus
ENSMLUG00000013992
N
0.741
RC3H2
Macaca mulatta
ENSMMUG00000021134
N
0.741
RC3H2
Ornithorhynchus anatinus
ENSOANG00000008194
N
0.741
Rc3h2
Mus musculus
ENSMUSG00000075376
N
0.741
RC3H2
Tupaia belangeri
ENSTBEG00000009622
N
0.741
GA14160-RA
Drosophila pseudoobscura
FBgn0074189
N
0.741
GL18000
Drosophila persimilis
FBgn0155603
N
0.741
GI16872
Drosophila mojavensis
FBgn0139618
N
0.741
GJ12622
Drosophila virilis
FBgn0199859
N
0.741
GK20807
Drosophila willistoni
FBgn0222803
N
0.741
ISCW013176
Ixodes scapularis
ISCW013176
N
0.741
GE22905
Drosophila yakuba
FBgn0240107
N
0.741
GH15595
Drosophila grimshawi
FBgn0123066
N
0.741
GG13458
Drosophila erecta
FBgn0105730
N
0.741
RC3H2
Tursiops truncatus
ENSTTRG00000016954
N
0.741
RC3H2
Tarsius syrichta
ENSTSYG00000000961
N
0.741
RC3H2
Vicugna pacos
ENSVPAG00000005994
N
0.741
RC3H2
Gorilla gorilla
ENSGGOG00000017062
N
0.741
GF24386
Drosophila ananassae
FBgn0101380
N
0.741
RC3H2
Taeniopygia guttata
ENSTGUG00000006889
N
0.741
RC3H2
Monodelphis domestica
ENSMODG00000019725
N
0.741
RC3H2
Callithrix jacchus
ENSCJAG00000020050
N
0.741
Rc3h2
Dipodomys ordii
ENSDORG00000006398
N
0.741
RC3H2
Canis familiaris
ENSCAFG00000020250
N
0.741
DGIL_AUG5s17420g5t1
Acyrtosiphon pisum
DGIL_AUG5s17420g5t1
N
0.741
RC3H2
Homo sapiens
ENSG00000056586
N
0.741
RC3H2
Gallus gallus
ENSGALG00000001253
N
0.741
RC3H2
Bos taurus
ENSBTAG00000023867
N
0.741
RC3H2
Cavia porcellus
ENSCPOG00000008511
N
0.741
RC3H2
Equus caballus
ENSECAG00000022176
N
0.741
Ame_R019935
Ailuropoda melanoleuca
Ame_R019935
N
0.741
fgenesh2_pg.scaffold_20000167
Branchiostoma floridae
fgenesh2_pg.scaffold_20000167
N
0.714
RC3H1
Tarsius syrichta
ENSTSYG00000003913
N
0.704
RC3H1
Tursiops truncatus
ENSTTRG00000008572
N
0.704
XP_002198236.1
Taeniopygia guttata
ENSTGUG00000014803
N
0.704
RC3H1
Tupaia belangeri
ENSTBEG00000005015
N
0.704
RC3H1
Cavia porcellus
ENSCPOG00000004349
N
0.704
RC3H1
Taeniopygia guttata
ENSTGUG00000004090
N
0.704
RC3H2
Takifugu rubripes
ENSTRUG00000003364
N
0.704
RC3H1
Callithrix jacchus
ENSCJAG00000009106
N
0.704
roq
Drosophila melanogaster
FBgn0036621
N
0.704
GM24408
Drosophila sechellia
FBgn0179271
N
0.704
GD12476
Drosophila simulans
FBgn0184205
N
0.704
Ame_R004849
Ailuropoda melanoleuca
Ame_R004849
N
0.704
e_gw.220.23.1
Nematostella vectensis
e_gw.220.23.1
N
0.704
AAH68669
Xenopus laevis
AAH68669
N
0.704
Q6NUC6
Xenopus laevis
Q6NUC6
N
0.704
RC3H1
Canis familiaris
ENSCAFG00000014434
N
0.704
rc3h1
Xenopus tropicalis
ENSXETG00000020030
N
0.704
RC3H1
Bos taurus
ENSBTAG00000020094
N
0.704
ENSACAG00000015271
Anolis carolinensis
ENSACAG00000015271
N
0.704
RC3H1
Vicugna pacos
ENSVPAG00000002591
N
0.704
Rc3h1
Dipodomys ordii
ENSDORG00000004855
N
0.704
Rc3h1
Mus musculus
ENSMUSG00000040423
N
0.704
e_gw1.81.15.1
Lottia gigantea
e_gw1.81.15.1
N
0.704
RC3H1
Homo sapiens
ENSG00000135870
N
0.704
RC3H1
Ornithorhynchus anatinus
ENSOANG00000000924
N
0.704
RC3H1
Oryctolagus cuniculus
ENSOCUG00000004930
N
0.704
RC3H1
Monodelphis domestica
ENSMODG00000004289
N
0.704
RC3H2
Gasterosteus aculeatus
ENSGACG00000017369
N
0.704
Q5F439_CHICK
Gallus gallus
ENSGALG00000004587
N
0.704
RC3H1
Loxodonta africana
ENSLAFG00000004367
N
0.704
RC3H1
Microcebus murinus
ENSMICG00000003000
N
0.704
RC3H1
Myotis lucifugus
ENSMLUG00000011127
N
0.704
RC3H1
Macaca mulatta
ENSMMUG00000000630
N
0.704
RC3H1
Echinops telfairi
ENSETEG00000012064
N
0.704
RC3H1
Erinaceus europaeus
ENSEEUG00000014861
N
0.704
LOC680586
Rattus norvegicus
ENSRNOG00000002750
N
0.704
RC3H1
Pteropus vampyrus
ENSPVAG00000007593
N
0.704
ENSSARG00000004660
Sorex araneus
ENSSARG00000004660
N
0.704
RC3H1
Gorilla gorilla
ENSGGOG00000005735
N
0.704
RC3H2
Danio rerio
ENSDARG00000063050
N
0.704
LOC100052499
Equus caballus
ENSECAG00000021208
N
0.704
RC3H1
Pan troglodytes
ENSPTRG00000001702
N
0.704
RC3H1
Ochotona princeps
ENSOPRG00000013068
N
0.704
RC3H2
Oryzias latipes
ENSORLG00000010018
N
0.704
RC3H1
Procavia capensis
ENSPCAG00000010775
N
0.704
ENSPPYG00000000490
Pongo pygmaeus
ENSPPYG00000000490
N
0.704
RC3H1
Sus scrofa
ENSSSCG00000015498
N
0.704