gw1.3.272.1 (Daphnia pulex)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 gw1.3.272.1 T05537_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.3.272.1 CCCH ZF 415 440

Links

Other CCCH ZF family RBPs
Other Daphnia pulex RBPs

106 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPIJ008431 Culex quinquefasciatus CPIJ008431 N 0.852
AAEL014030 Aedes aegypti AAEL014030 N 0.852
CpipJ_CPIJ008431 Culex pipiens CpipJ_CPIJ008431 N 0.852
PHUM537030 Pediculus humanus PHUM537030 N 0.852
gw1.780.2.1 Capitella teleta gw1.780.2.1 N 0.778
RC3H2 Homo sapiens ENSG00000056586 N 0.778
RC3H2 Ornithorhynchus anatinus ENSOANG00000008194 N 0.778
RC3H2 Oryctolagus cuniculus ENSOCUG00000008804 N 0.778
RC3H2 Monodelphis domestica ENSMODG00000019725 N 0.778
RC3H2 Macaca mulatta ENSMMUG00000021134 N 0.778
RC3H2 Loxodonta africana ENSLAFG00000003521 N 0.778
RC3H2 Gorilla gorilla ENSGGOG00000017062 N 0.778
RC3H2 Meleagris gallopavo ENSMGAG00000007984 N 0.778
RC3H2 Otolemur garnettii ENSOGAG00000010678 N 0.778
RC3H2 Myotis lucifugus ENSMLUG00000013992 N 0.778
RC3H2 Gallus gallus ENSGALG00000001253 N 0.778
Rc3h2 Rattus norvegicus ENSRNOG00000009196 N 0.778
RC3H2 Tarsius syrichta ENSTSYG00000000961 N 0.778
RC3H2 Taeniopygia guttata ENSTGUG00000006889 N 0.778
RC3H2 Tursiops truncatus ENSTTRG00000016954 N 0.778
RC3H2 Vicugna pacos ENSVPAG00000005994 N 0.778
ISCW013176 Ixodes scapularis ISCW013176 N 0.778
RC3H2 Tupaia belangeri ENSTBEG00000009622 N 0.778
RC3H2 Spermophilus tridecemlineatus ENSSTOG00000010655 N 0.778
RC3H2 Pan troglodytes ENSPTRG00000021339 N 0.778
RC3H2 Equus caballus ENSECAG00000022176 N 0.778
RC3H2 Sorex araneus ENSSARG00000012329 N 0.778
RC3H2 Sus scrofa ENSSSCG00000005575 N 0.778
RC3H2 Ochotona princeps ENSOPRG00000000135 N 0.778
Rc3h2 Mus musculus ENSMUSG00000075376 N 0.778
RC3H2 Callithrix jacchus ENSCJAG00000020050 N 0.778
XP_001178544.1 Strongylocentrotus purpuratus XP_001178544.1 N 0.778
RC3H2 Canis familiaris ENSCAFG00000020250 N 0.778
RC3H2 Bos taurus ENSBTAG00000023867 N 0.778
AGAP007114 Anopheles gambiae AGAP007114 N 0.778
DGIL_AUG5s17420g5t1 Acyrtosiphon pisum DGIL_AUG5s17420g5t1 N 0.778
XP_001176931.1 Strongylocentrotus purpuratus XP_001176931.1 N 0.778
RC3H2 Cavia porcellus ENSCPOG00000008511 N 0.778
Rc3h2 Dipodomys ordii ENSDORG00000006398 N 0.778
Ame_R019935 Ailuropoda melanoleuca Ame_R019935 N 0.778
fgenesh2_pg.scaffold_20000167 Branchiostoma floridae fgenesh2_pg.scaffold_20000167 N 0.750
Ame_R004849 Ailuropoda melanoleuca Ame_R004849 N 0.741
Q6NUC6 Xenopus laevis Q6NUC6 N 0.741
RC3H2 Takifugu rubripes ENSTRUG00000003364 N 0.741
XP_002198236.1 Taeniopygia guttata ENSTGUG00000014803 N 0.741
RC3H1 Taeniopygia guttata ENSTGUG00000004090 N 0.741
amel4_ncbi_hmm20485 Apis mellifera amel4_ncbi_hmm20485 N 0.741
ENSSARG00000004660 Sorex araneus ENSSARG00000004660 N 0.741
ENSACAG00000015271 Anolis carolinensis ENSACAG00000015271 N 0.741
RC3H1 Sus scrofa ENSSSCG00000015498 N 0.741
e_gw.220.23.1 Nematostella vectensis e_gw.220.23.1 N 0.741
RC3H1 Tupaia belangeri ENSTBEG00000005015 N 0.741
AAH68669 Xenopus laevis AAH68669 N 0.741
GE22905 Drosophila yakuba FBgn0240107 N 0.741
GG13458 Drosophila erecta FBgn0105730 N 0.741
GF24386 Drosophila ananassae FBgn0101380 N 0.741
GH15595 Drosophila grimshawi FBgn0123066 N 0.741
GI16872 Drosophila mojavensis FBgn0139618 N 0.741
GL18000 Drosophila persimilis FBgn0155603 N 0.741
GA14160-RA Drosophila pseudoobscura FBgn0074189 N 0.741
rc3h1 Xenopus tropicalis ENSXETG00000020030 N 0.741
RC3H1 Tursiops truncatus ENSTTRG00000008572 N 0.741
RC3H1 Tarsius syrichta ENSTSYG00000003913 N 0.741
RC3H1 Erinaceus europaeus ENSEEUG00000014861 N 0.741
RC3H1 Vicugna pacos ENSVPAG00000002591 N 0.741
GK20807 Drosophila willistoni FBgn0222803 N 0.741
GJ12622 Drosophila virilis FBgn0199859 N 0.741
LOC680586 Rattus norvegicus ENSRNOG00000002750 N 0.741
RC3H1 Microcebus murinus ENSMICG00000003000 N 0.741
RC3H2 Danio rerio ENSDARG00000063050 N 0.741
RC3H1 Myotis lucifugus ENSMLUG00000011127 N 0.741
RC3H1 Macaca mulatta ENSMMUG00000000630 N 0.741
RC3H1 Cavia porcellus ENSCPOG00000004349 N 0.741
RC3H1 Pteropus vampyrus ENSPVAG00000007593 N 0.741
RC3H1 Loxodonta africana ENSLAFG00000004367 N 0.741
Rc3h1 Dipodomys ordii ENSDORG00000004855 N 0.741
LOC100052499 Equus caballus ENSECAG00000021208 N 0.741
RC3H1 Echinops telfairi ENSETEG00000012064 N 0.741
RC3H1 Homo sapiens ENSG00000135870 N 0.741
RC3H2 Gasterosteus aculeatus ENSGACG00000017369 N 0.741
RC3H1 Gorilla gorilla ENSGGOG00000005735 N 0.741
Q5F439_CHICK Gallus gallus ENSGALG00000004587 N 0.741
Rc3h1 Mus musculus ENSMUSG00000040423 N 0.741
RC3H1 Monodelphis domestica ENSMODG00000004289 N 0.741
RC3H2 Oryzias latipes ENSORLG00000010018 N 0.741
RC3H1 Ornithorhynchus anatinus ENSOANG00000000924 N 0.741
RC3H1 Procavia capensis ENSPCAG00000010775 N 0.741
ENSPPYG00000000490 Pongo pygmaeus ENSPPYG00000000490 N 0.741
RC3H1 Bos taurus ENSBTAG00000020094 N 0.741
RC3H1 Pan troglodytes ENSPTRG00000001702 N 0.741
RC3H1 Canis familiaris ENSCAFG00000014434 N 0.741
RC3H1 Ochotona princeps ENSOPRG00000013068 N 0.741
RC3H1 Callithrix jacchus ENSCJAG00000009106 N 0.741
RC3H1 Oryctolagus cuniculus ENSOCUG00000004930 N 0.741
ENSTNIG00000015269 Tetraodon nigroviridis ENSTNIG00000015269 N 0.704
ENSGACG00000013855 Gasterosteus aculeatus ENSGACG00000013855 N 0.704
nasonia_NCBI_hmm328144 Nasonia vitripennis nasonia_NCBI_hmm328144 N 0.704
ENSTRUG00000008347 Takifugu rubripes ENSTRUG00000008347 N 0.704
rc3h1 Danio rerio ENSDARG00000062550 N 0.704
GD12476 Drosophila simulans FBgn0184205 N 0.704
roq Drosophila melanogaster FBgn0036621 N 0.704
RC3H2 Macropus eugenii ENSMEUG00000001299 N 0.704
si:dkey-60b12.1 Danio rerio ENSDARG00000063182 N 0.704
RC3H2 Tetraodon nigroviridis ENSTNIG00000004942 N 0.704
GM24408 Drosophila sechellia FBgn0179271 N 0.704
ENSORLG00000016041 Oryzias latipes ENSORLG00000016041 N 0.704